miRNA display CGI


Results 21 - 40 of 317 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29149 3' -62.1 NC_006146.1 + 168132 0.69 0.472203
Target:  5'- cGGGguCCCgGGGGGcggcGCgCGGCcUUCCCc -3'
miRNA:   3'- -UCCguGGGaCCCUC----UGgGCCG-AAGGG- -5'
29149 3' -62.1 NC_006146.1 + 167899 0.66 0.677733
Target:  5'- cGGGgACCCUcGcGGGGGCaCCGGCgcguggagaagaCCCu -3'
miRNA:   3'- -UCCgUGGGA-C-CCUCUG-GGCCGaa----------GGG- -5'
29149 3' -62.1 NC_006146.1 + 167860 0.68 0.563267
Target:  5'- uGGGCGCUCagaucggcgcggGGGAGcCCCggGGCggCCCg -3'
miRNA:   3'- -UCCGUGGGa-----------CCCUCuGGG--CCGaaGGG- -5'
29149 3' -62.1 NC_006146.1 + 167659 0.71 0.382833
Target:  5'- cGGGgGCCCgGGGGcgugucccgcGACCCgaggggcgagcggggGGCUUCCCc -3'
miRNA:   3'- -UCCgUGGGaCCCU----------CUGGG---------------CCGAAGGG- -5'
29149 3' -62.1 NC_006146.1 + 167599 0.68 0.536625
Target:  5'- cGGGCcucCCCUGGG-GGCCUcgggGGCggaggggggggUCCCg -3'
miRNA:   3'- -UCCGu--GGGACCCuCUGGG----CCGa----------AGGG- -5'
29149 3' -62.1 NC_006146.1 + 167541 0.68 0.574796
Target:  5'- cGGCcccucUCCUGGGAGGCCaCGuGUggaggCCCg -3'
miRNA:   3'- uCCGu----GGGACCCUCUGG-GC-CGaa---GGG- -5'
29149 3' -62.1 NC_006146.1 + 167309 0.79 0.128484
Target:  5'- cGGCGCCUgcaGGGGGGgCCGGCggggcgUCCCg -3'
miRNA:   3'- uCCGUGGGa--CCCUCUgGGCCGa-----AGGG- -5'
29149 3' -62.1 NC_006146.1 + 167200 0.69 0.472203
Target:  5'- cGGGguCCCgGGGGGcggcGCgCGGCcUUCCCc -3'
miRNA:   3'- -UCCguGGGaCCCUC----UGgGCCG-AAGGG- -5'
29149 3' -62.1 NC_006146.1 + 162008 0.87 0.036864
Target:  5'- uAGGCACCCUGGGAGACC-GGCU-CCa -3'
miRNA:   3'- -UCCGUGGGACCCUCUGGgCCGAaGGg -5'
29149 3' -62.1 NC_006146.1 + 161971 0.71 0.371894
Target:  5'- cGGGCAacgcCCCgUGGGAGACC-GGCU-CCa -3'
miRNA:   3'- -UCCGU----GGG-ACCCUCUGGgCCGAaGGg -5'
29149 3' -62.1 NC_006146.1 + 161941 1.1 0.000786
Target:  5'- uAGGCACCCUGGGAGACCCGGCUUCCCu -3'
miRNA:   3'- -UCCGUGGGACCCUCUGGGCCGAAGGG- -5'
29149 3' -62.1 NC_006146.1 + 161904 0.71 0.379686
Target:  5'- uGGGCAacgcCCCgUGGGAGACC-GGCU-CCa -3'
miRNA:   3'- -UCCGU----GGG-ACCCUCUGGgCCGAaGGg -5'
29149 3' -62.1 NC_006146.1 + 161874 1.03 0.002725
Target:  5'- uAGGCuCCCUGGGAGACCCGGCUUCCCu -3'
miRNA:   3'- -UCCGuGGGACCCUCUGGGCCGAAGGG- -5'
29149 3' -62.1 NC_006146.1 + 161837 0.71 0.403706
Target:  5'- uGGGCcacGCCCcgUGGGAGACC-GGCU-CCa -3'
miRNA:   3'- -UCCG---UGGG--ACCCUCUGGgCCGAaGGg -5'
29149 3' -62.1 NC_006146.1 + 161807 0.98 0.005865
Target:  5'- uAGGCuCCCUGGGAGACCCGGCUUUCCu -3'
miRNA:   3'- -UCCGuGGGACCCUCUGGGCCGAAGGG- -5'
29149 3' -62.1 NC_006146.1 + 161772 0.66 0.642776
Target:  5'- gGGGCGCCUggGcGGGGGCCUGaauCUUCgCCu -3'
miRNA:   3'- -UCCGUGGGa-C-CCUCUGGGCc--GAAG-GG- -5'
29149 3' -62.1 NC_006146.1 + 161770 0.71 0.364213
Target:  5'- gAGGCAacgcCCCgUGGGAGACC-GGCU-CCa -3'
miRNA:   3'- -UCCGU----GGG-ACCCUCUGGgCCGAaGGg -5'
29149 3' -62.1 NC_006146.1 + 161740 0.66 0.691228
Target:  5'- uGGCACggUGGGAG-CCCGcCgUCCCc -3'
miRNA:   3'- uCCGUGggACCCUCuGGGCcGaAGGG- -5'
29149 3' -62.1 NC_006146.1 + 158546 0.7 0.420244
Target:  5'- cGGGguCCCUGGGGcuccuucUCCaGCUUCCCg -3'
miRNA:   3'- -UCCguGGGACCCUcu-----GGGcCGAAGGG- -5'
29149 3' -62.1 NC_006146.1 + 157824 0.67 0.613553
Target:  5'- gGGGuCugUCUGGGGGACUgagggCGGCcgCCUu -3'
miRNA:   3'- -UCC-GugGGACCCUCUGG-----GCCGaaGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.