miRNA display CGI


Results 1 - 20 of 317 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29149 3' -62.1 NC_006146.1 + 170668 0.68 0.536625
Target:  5'- cGGCGCgg-GGGAGGCCaggGGCgcCCCg -3'
miRNA:   3'- uCCGUGggaCCCUCUGGg--CCGaaGGG- -5'
29149 3' -62.1 NC_006146.1 + 170525 0.66 0.691228
Target:  5'- cGGGCGgggCCUGaGGGGGCgCGGCgauugUCgCCg -3'
miRNA:   3'- -UCCGUg--GGAC-CCUCUGgGCCGa----AG-GG- -5'
29149 3' -62.1 NC_006146.1 + 170444 0.74 0.274552
Target:  5'- cGGCGCgUgccGGGGGACCCgggGGCgugUCCCg -3'
miRNA:   3'- uCCGUGgGa--CCCUCUGGG---CCGa--AGGG- -5'
29149 3' -62.1 NC_006146.1 + 170394 0.68 0.536625
Target:  5'- cGGGCcucCCCUGGG-GGCCUcgggGGCggaggggggggUCCCg -3'
miRNA:   3'- -UCCGu--GGGACCCuCUGGG----CCGa----------AGGG- -5'
29149 3' -62.1 NC_006146.1 + 170336 0.68 0.574796
Target:  5'- cGGCcccucUCCUGGGAGGCCaCGuGUggaggCCCg -3'
miRNA:   3'- uCCGu----GGGACCCUCUGG-GC-CGaa---GGG- -5'
29149 3' -62.1 NC_006146.1 + 170105 0.77 0.168093
Target:  5'- cGGCGCCgCaGGGGGGgCCGGCggggcgUCCCg -3'
miRNA:   3'- uCCGUGG-GaCCCUCUgGGCCGa-----AGGG- -5'
29149 3' -62.1 NC_006146.1 + 169996 0.69 0.472203
Target:  5'- cGGGguCCCgGGGGGcggcGCgCGGCcUUCCCc -3'
miRNA:   3'- -UCCguGGGaCCCUC----UGgGCCG-AAGGG- -5'
29149 3' -62.1 NC_006146.1 + 169763 0.66 0.677733
Target:  5'- cGGGgACCCUcGcGGGGGCaCCGGCgcguggagaagaCCCu -3'
miRNA:   3'- -UCCgUGGGA-C-CCUCUG-GGCCGaa----------GGG- -5'
29149 3' -62.1 NC_006146.1 + 169724 0.68 0.563267
Target:  5'- uGGGCGCUCagaucggcgcggGGGAGcCCCggGGCggCCCg -3'
miRNA:   3'- -UCCGUGGGa-----------CCCUCuGGG--CCGaaGGG- -5'
29149 3' -62.1 NC_006146.1 + 169513 0.74 0.274552
Target:  5'- cGGCGCgUgccGGGGGACCCgggGGCgugUCCCg -3'
miRNA:   3'- uCCGUGgGa--CCCUCUGGG---CCGa--AGGG- -5'
29149 3' -62.1 NC_006146.1 + 169463 0.68 0.536625
Target:  5'- cGGGCcucCCCUGGG-GGCCUcgggGGCggaggggggggUCCCg -3'
miRNA:   3'- -UCCGu--GGGACCCuCUGGG----CCGa----------AGGG- -5'
29149 3' -62.1 NC_006146.1 + 169405 0.68 0.574796
Target:  5'- cGGCcccucUCCUGGGAGGCCaCGuGUggaggCCCg -3'
miRNA:   3'- uCCGu----GGGACCCUCUGG-GC-CGaa---GGG- -5'
29149 3' -62.1 NC_006146.1 + 169173 0.79 0.128484
Target:  5'- cGGCGCCUgcaGGGGGGgCCGGCggggcgUCCCg -3'
miRNA:   3'- uCCGUGGGa--CCCUCUgGGCCGa-----AGGG- -5'
29149 3' -62.1 NC_006146.1 + 169064 0.69 0.472203
Target:  5'- cGGGguCCCgGGGGGcggcGCgCGGCcUUCCCc -3'
miRNA:   3'- -UCCguGGGaCCCUC----UGgGCCG-AAGGG- -5'
29149 3' -62.1 NC_006146.1 + 168831 0.66 0.677733
Target:  5'- cGGGgACCCUcGcGGGGGCaCCGGCgcguggagaagaCCCu -3'
miRNA:   3'- -UCCgUGGGA-C-CCUCUG-GGCCGaa----------GGG- -5'
29149 3' -62.1 NC_006146.1 + 168792 0.68 0.563267
Target:  5'- uGGGCGCUCagaucggcgcggGGGAGcCCCggGGCggCCCg -3'
miRNA:   3'- -UCCGUGGGa-----------CCCUCuGGG--CCGaaGGG- -5'
29149 3' -62.1 NC_006146.1 + 168581 0.74 0.274552
Target:  5'- cGGCGCgUgccGGGGGACCCgggGGCgugUCCCg -3'
miRNA:   3'- uCCGUGgGa--CCCUCUGGG---CCGa--AGGG- -5'
29149 3' -62.1 NC_006146.1 + 168531 0.68 0.536625
Target:  5'- cGGGCcucCCCUGGG-GGCCUcgggGGCggaggggggggUCCCg -3'
miRNA:   3'- -UCCGu--GGGACCCuCUGGG----CCGa----------AGGG- -5'
29149 3' -62.1 NC_006146.1 + 168473 0.68 0.574796
Target:  5'- cGGCcccucUCCUGGGAGGCCaCGuGUggaggCCCg -3'
miRNA:   3'- uCCGu----GGGACCCUCUGG-GC-CGaa---GGG- -5'
29149 3' -62.1 NC_006146.1 + 168241 0.79 0.128484
Target:  5'- cGGCGCCUgcaGGGGGGgCCGGCggggcgUCCCg -3'
miRNA:   3'- uCCGUGGGa--CCCUCUgGGCCGa-----AGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.