miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29150 5' -57.8 NC_006146.1 + 164443 1.1 0.001744
Target:  5'- aGUGGGCCGUGGUUGUUGUUGGGGCCCc -3'
miRNA:   3'- -CACCCGGCACCAACAACAACCCCGGG- -5'
29150 5' -57.8 NC_006146.1 + 95513 0.77 0.282049
Target:  5'- -gGGGacaaCG-GGUUGgacaggUGUUGGGGCCCa -3'
miRNA:   3'- caCCCg---GCaCCAACa-----ACAACCCCGGG- -5'
29150 5' -57.8 NC_006146.1 + 44752 0.77 0.302085
Target:  5'- -gGcGGCUGUGGUUGUc---GGGGCCCg -3'
miRNA:   3'- caC-CCGGCACCAACAacaaCCCCGGG- -5'
29150 5' -57.8 NC_006146.1 + 6431 0.75 0.384767
Target:  5'- -aGGGCCauGUGGgcccUGggGUccaUGGGGCCCc -3'
miRNA:   3'- caCCCGG--CACCa---ACaaCA---ACCCCGGG- -5'
29150 5' -57.8 NC_006146.1 + 99992 0.72 0.518969
Target:  5'- cUGGGCgGUGGUUGUUGcUGacaucGCCCa -3'
miRNA:   3'- cACCCGgCACCAACAACaACcc---CGGG- -5'
29150 5' -57.8 NC_006146.1 + 138807 0.71 0.567837
Target:  5'- aUGGGCCcggGGUUGgUGagcuaUUGGGcGCCCg -3'
miRNA:   3'- cACCCGGca-CCAACaAC-----AACCC-CGGG- -5'
29150 5' -57.8 NC_006146.1 + 24205 0.71 0.597723
Target:  5'- cUGGGCCugcgaGGUUc-UGUUGGGGCCg -3'
miRNA:   3'- cACCCGGca---CCAAcaACAACCCCGGg -5'
29150 5' -57.8 NC_006146.1 + 88256 0.71 0.604735
Target:  5'- -cGGGCUGUGGUUGUaaaggauggguaUGUgcuggccugggauaUGGaGCCCa -3'
miRNA:   3'- caCCCGGCACCAACA------------ACA--------------ACCcCGGG- -5'
29150 5' -57.8 NC_006146.1 + 92934 0.71 0.607743
Target:  5'- uGUGGGuuGU-GUUGUUuuugguggaGUUGGGGCUg -3'
miRNA:   3'- -CACCCggCAcCAACAA---------CAACCCCGGg -5'
29150 5' -57.8 NC_006146.1 + 41848 0.7 0.637879
Target:  5'- -cGGGCCGUGGccaGggGcuaccGGGGCCUc -3'
miRNA:   3'- caCCCGGCACCaa-CaaCaa---CCCCGGG- -5'
29150 5' -57.8 NC_006146.1 + 148024 0.7 0.647926
Target:  5'- -gGGGCCucuGUUGagaucggcGUUGGGGCCCa -3'
miRNA:   3'- caCCCGGcacCAACaa------CAACCCCGGG- -5'
29150 5' -57.8 NC_006146.1 + 70183 0.7 0.667975
Target:  5'- gGUGGGCCGU-GUUGUacugggucagGUUcaGGGCCCc -3'
miRNA:   3'- -CACCCGGCAcCAACAa---------CAAc-CCCGGG- -5'
29150 5' -57.8 NC_006146.1 + 43641 0.69 0.727183
Target:  5'- -cGGGgCGUGGccgccUGggGagaGGGGCCCg -3'
miRNA:   3'- caCCCgGCACCa----ACaaCaa-CCCCGGG- -5'
29150 5' -57.8 NC_006146.1 + 139132 0.68 0.747328
Target:  5'- -gGGGCUGUGGgccgaacgGGGGCUCc -3'
miRNA:   3'- caCCCGGCACCaacaacaaCCCCGGG- -5'
29150 5' -57.8 NC_006146.1 + 167621 0.68 0.755835
Target:  5'- -gGGGCgGaGGggGggGUcccgcGGGGCCCg -3'
miRNA:   3'- caCCCGgCaCCaaCaaCAa----CCCCGGG- -5'
29150 5' -57.8 NC_006146.1 + 168553 0.68 0.755835
Target:  5'- -gGGGCgGaGGggGggGUcccgcGGGGCCCg -3'
miRNA:   3'- caCCCGgCaCCaaCaaCAa----CCCCGGG- -5'
29150 5' -57.8 NC_006146.1 + 169485 0.68 0.755835
Target:  5'- -gGGGCgGaGGggGggGUcccgcGGGGCCCg -3'
miRNA:   3'- caCCCGgCaCCaaCaaCAa----CCCCGGG- -5'
29150 5' -57.8 NC_006146.1 + 170416 0.68 0.755835
Target:  5'- -gGGGCgGaGGggGggGUcccgcGGGGCCCg -3'
miRNA:   3'- caCCCGgCaCCaaCaaCAa----CCCCGGG- -5'
29150 5' -57.8 NC_006146.1 + 65504 0.68 0.774424
Target:  5'- cGUGGGgC-UGGUUGgUG-UGGGGUCUu -3'
miRNA:   3'- -CACCCgGcACCAACaACaACCCCGGG- -5'
29150 5' -57.8 NC_006146.1 + 88962 0.68 0.774424
Target:  5'- aGUGGaGCCugcUGGgaaUGUUGUggcUGGGGCUg -3'
miRNA:   3'- -CACC-CGGc--ACCa--ACAACA---ACCCCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.