miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29150 5' -57.8 NC_006146.1 + 6431 0.75 0.384767
Target:  5'- -aGGGCCauGUGGgcccUGggGUccaUGGGGCCCc -3'
miRNA:   3'- caCCCGG--CACCa---ACaaCA---ACCCCGGG- -5'
29150 5' -57.8 NC_006146.1 + 18866 0.66 0.866169
Target:  5'- -gGGGUgGUGGacg-UGcgGGGGCCUc -3'
miRNA:   3'- caCCCGgCACCaacaACaaCCCCGGG- -5'
29150 5' -57.8 NC_006146.1 + 24205 0.71 0.597723
Target:  5'- cUGGGCCugcgaGGUUc-UGUUGGGGCCg -3'
miRNA:   3'- cACCCGGca---CCAAcaACAACCCCGGg -5'
29150 5' -57.8 NC_006146.1 + 33235 0.67 0.826983
Target:  5'- -gGGGCUGgGGUuccgGggGUgGGGGCuCCa -3'
miRNA:   3'- caCCCGGCaCCAa---CaaCAaCCCCG-GG- -5'
29150 5' -57.8 NC_006146.1 + 41848 0.7 0.637879
Target:  5'- -cGGGCCGUGGccaGggGcuaccGGGGCCUc -3'
miRNA:   3'- caCCCGGCACCaa-CaaCaa---CCCCGGG- -5'
29150 5' -57.8 NC_006146.1 + 43641 0.69 0.727183
Target:  5'- -cGGGgCGUGGccgccUGggGagaGGGGCCCg -3'
miRNA:   3'- caCCCgGCACCa----ACaaCaa-CCCCGGG- -5'
29150 5' -57.8 NC_006146.1 + 44323 0.66 0.840029
Target:  5'- -gGGGCCGUGGcagccg--GGGGCUUc -3'
miRNA:   3'- caCCCGGCACCaacaacaaCCCCGGG- -5'
29150 5' -57.8 NC_006146.1 + 44752 0.77 0.302085
Target:  5'- -gGcGGCUGUGGUUGUc---GGGGCCCg -3'
miRNA:   3'- caC-CCGGCACCAACAacaaCCCCGGG- -5'
29150 5' -57.8 NC_006146.1 + 47054 0.66 0.87342
Target:  5'- -gGGGCCGgucgccGGUgucgGUgagGGGGCgCCu -3'
miRNA:   3'- caCCCGGCa-----CCAacaaCAa--CCCCG-GG- -5'
29150 5' -57.8 NC_006146.1 + 51832 0.66 0.843218
Target:  5'- -gGGGCggCGUGGagGggGgcucGGGGCCUg -3'
miRNA:   3'- caCCCG--GCACCaaCaaCaa--CCCCGGG- -5'
29150 5' -57.8 NC_006146.1 + 60104 0.66 0.851062
Target:  5'- -cGGGCC--GGUUGgcGUUcugugcaaGGGGCCg -3'
miRNA:   3'- caCCCGGcaCCAACaaCAA--------CCCCGGg -5'
29150 5' -57.8 NC_006146.1 + 65504 0.68 0.774424
Target:  5'- cGUGGGgC-UGGUUGgUG-UGGGGUCUu -3'
miRNA:   3'- -CACCCgGcACCAACaACaACCCCGGG- -5'
29150 5' -57.8 NC_006146.1 + 70183 0.7 0.667975
Target:  5'- gGUGGGCCGU-GUUGUacugggucagGUUcaGGGCCCc -3'
miRNA:   3'- -CACCCGGCAcCAACAa---------CAAc-CCCGGG- -5'
29150 5' -57.8 NC_006146.1 + 70546 0.67 0.826983
Target:  5'- -aGGGCgGUGGUgggguauauggGUUG-UGGGcaucguGCCCg -3'
miRNA:   3'- caCCCGgCACCAa----------CAACaACCC------CGGG- -5'
29150 5' -57.8 NC_006146.1 + 80315 0.67 0.792523
Target:  5'- -aGaGGUCGUGGU--UUGgcgacUGGGGCCUu -3'
miRNA:   3'- caC-CCGGCACCAacAACa----ACCCCGGG- -5'
29150 5' -57.8 NC_006146.1 + 83750 0.67 0.792523
Target:  5'- uGUGGGCCGUGaGcaGUg---GGuGGCCUg -3'
miRNA:   3'- -CACCCGGCAC-CaaCAacaaCC-CCGGG- -5'
29150 5' -57.8 NC_006146.1 + 88256 0.71 0.604735
Target:  5'- -cGGGCUGUGGUUGUaaaggauggguaUGUgcuggccugggauaUGGaGCCCa -3'
miRNA:   3'- caCCCGGCACCAACA------------ACA--------------ACCcCGGG- -5'
29150 5' -57.8 NC_006146.1 + 88347 0.66 0.851062
Target:  5'- uUGGGCCcaGGggGUUaaaGGaGGCCCa -3'
miRNA:   3'- cACCCGGcaCCaaCAAcaaCC-CCGGG- -5'
29150 5' -57.8 NC_006146.1 + 88962 0.68 0.774424
Target:  5'- aGUGGaGCCugcUGGgaaUGUUGUggcUGGGGCUg -3'
miRNA:   3'- -CACC-CGGc--ACCa--ACAACA---ACCCCGGg -5'
29150 5' -57.8 NC_006146.1 + 89173 0.66 0.858714
Target:  5'- -aGGGCUGUGaUUccacaucaGUUGUauccUGGGGCUCc -3'
miRNA:   3'- caCCCGGCACcAA--------CAACA----ACCCCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.