Results 1 - 20 of 40 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29150 | 5' | -57.8 | NC_006146.1 | + | 41848 | 0.7 | 0.637879 |
Target: 5'- -cGGGCCGUGGccaGggGcuaccGGGGCCUc -3' miRNA: 3'- caCCCGGCACCaa-CaaCaa---CCCCGGG- -5' |
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29150 | 5' | -57.8 | NC_006146.1 | + | 60104 | 0.66 | 0.851062 |
Target: 5'- -cGGGCC--GGUUGgcGUUcugugcaaGGGGCCg -3' miRNA: 3'- caCCCGGcaCCAACaaCAA--------CCCCGGg -5' |
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29150 | 5' | -57.8 | NC_006146.1 | + | 163687 | 0.66 | 0.858714 |
Target: 5'- uGUGcaGGCgCGUGGgccUUGgUGGGGCCa -3' miRNA: 3'- -CAC--CCG-GCACCaacAACaACCCCGGg -5' |
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29150 | 5' | -57.8 | NC_006146.1 | + | 47054 | 0.66 | 0.87342 |
Target: 5'- -gGGGCCGgucgccGGUgucgGUgagGGGGCgCCu -3' miRNA: 3'- caCCCGGCa-----CCAacaaCAa--CCCCG-GG- -5' |
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29150 | 5' | -57.8 | NC_006146.1 | + | 168553 | 0.68 | 0.755835 |
Target: 5'- -gGGGCgGaGGggGggGUcccgcGGGGCCCg -3' miRNA: 3'- caCCCGgCaCCaaCaaCAa----CCCCGGG- -5' |
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29150 | 5' | -57.8 | NC_006146.1 | + | 169485 | 0.68 | 0.755835 |
Target: 5'- -gGGGCgGaGGggGggGUcccgcGGGGCCCg -3' miRNA: 3'- caCCCGgCaCCaaCaaCAa----CCCCGGG- -5' |
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29150 | 5' | -57.8 | NC_006146.1 | + | 65504 | 0.68 | 0.774424 |
Target: 5'- cGUGGGgC-UGGUUGgUG-UGGGGUCUu -3' miRNA: 3'- -CACCCgGcACCAACaACaACCCCGGG- -5' |
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29150 | 5' | -57.8 | NC_006146.1 | + | 164443 | 1.1 | 0.001744 |
Target: 5'- aGUGGGCCGUGGUUGUUGUUGGGGCCCc -3' miRNA: 3'- -CACCCGGCACCAACAACAACCCCGGG- -5' |
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29150 | 5' | -57.8 | NC_006146.1 | + | 44752 | 0.77 | 0.302085 |
Target: 5'- -gGcGGCUGUGGUUGUc---GGGGCCCg -3' miRNA: 3'- caC-CCGGCACCAACAacaaCCCCGGG- -5' |
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29150 | 5' | -57.8 | NC_006146.1 | + | 51832 | 0.66 | 0.843218 |
Target: 5'- -gGGGCggCGUGGagGggGgcucGGGGCCUg -3' miRNA: 3'- caCCCG--GCACCaaCaaCaa--CCCCGGG- -5' |
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29150 | 5' | -57.8 | NC_006146.1 | + | 168336 | 0.66 | 0.843218 |
Target: 5'- -gGGGCCG-GGgcc-UGgcgGGGGCCa -3' miRNA: 3'- caCCCGGCaCCaacaACaa-CCCCGGg -5' |
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29150 | 5' | -57.8 | NC_006146.1 | + | 167404 | 0.66 | 0.843218 |
Target: 5'- -gGGGCCG-GGgcc-UGgcgGGGGCCa -3' miRNA: 3'- caCCCGGCaCCaacaACaa-CCCCGGg -5' |
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29150 | 5' | -57.8 | NC_006146.1 | + | 148024 | 0.7 | 0.647926 |
Target: 5'- -gGGGCCucuGUUGagaucggcGUUGGGGCCCa -3' miRNA: 3'- caCCCGGcacCAACaa------CAACCCCGGG- -5' |
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29150 | 5' | -57.8 | NC_006146.1 | + | 169268 | 0.66 | 0.843218 |
Target: 5'- -gGGGCCG-GGgcc-UGgcgGGGGCCa -3' miRNA: 3'- caCCCGGCaCCaacaACaa-CCCCGGg -5' |
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29150 | 5' | -57.8 | NC_006146.1 | + | 139132 | 0.68 | 0.747328 |
Target: 5'- -gGGGCUGUGGgccgaacgGGGGCUCc -3' miRNA: 3'- caCCCGGCACCaacaacaaCCCCGGG- -5' |
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29150 | 5' | -57.8 | NC_006146.1 | + | 44323 | 0.66 | 0.840029 |
Target: 5'- -gGGGCCGUGGcagccg--GGGGCUUc -3' miRNA: 3'- caCCCGGCACCaacaacaaCCCCGGG- -5' |
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29150 | 5' | -57.8 | NC_006146.1 | + | 170199 | 0.66 | 0.843218 |
Target: 5'- -gGGGCCG-GGgcc-UGgcgGGGGCCa -3' miRNA: 3'- caCCCGGCaCCaacaACaa-CCCCGGg -5' |
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29150 | 5' | -57.8 | NC_006146.1 | + | 153447 | 0.66 | 0.851062 |
Target: 5'- -gGGGCCG-GuGUUG-UGUUGuuGCCCu -3' miRNA: 3'- caCCCGGCaC-CAACaACAACccCGGG- -5' |
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29150 | 5' | -57.8 | NC_006146.1 | + | 167621 | 0.68 | 0.755835 |
Target: 5'- -gGGGCgGaGGggGggGUcccgcGGGGCCCg -3' miRNA: 3'- caCCCGgCaCCaaCaaCAa----CCCCGGG- -5' |
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29150 | 5' | -57.8 | NC_006146.1 | + | 170416 | 0.68 | 0.755835 |
Target: 5'- -gGGGCgGaGGggGggGUcccgcGGGGCCCg -3' miRNA: 3'- caCCCGgCaCCaaCaaCAa----CCCCGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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