miRNA display CGI


Results 41 - 60 of 322 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29151 3' -55.8 NC_006146.1 + 168500 0.71 0.72352
Target:  5'- cGGGGGGCCGGggACCA-ACaGAgCCCu -3'
miRNA:   3'- uUCUCCUGGCCa-UGGUuUGcCUgGGG- -5'
29151 3' -55.8 NC_006146.1 + 14807 0.7 0.730362
Target:  5'- gGAGAGG-CCGGccggGCCGGAggagggcacggucuCGGGCCCg -3'
miRNA:   3'- -UUCUCCuGGCCa---UGGUUU--------------GCCUGGGg -5'
29151 3' -55.8 NC_006146.1 + 46932 0.7 0.733281
Target:  5'- -cGGGGACuCGGUcuccaGCCAcAgGGugCCCg -3'
miRNA:   3'- uuCUCCUG-GCCA-----UGGUuUgCCugGGG- -5'
29151 3' -55.8 NC_006146.1 + 105292 0.7 0.733281
Target:  5'- gAAGAGGucucugacGCCGcGUcagacuGCgAAAUGGACCCCa -3'
miRNA:   3'- -UUCUCC--------UGGC-CA------UGgUUUGCCUGGGG- -5'
29151 3' -55.8 NC_006146.1 + 79119 0.7 0.733281
Target:  5'- --aAGGcccGCgGGUGCCAGcACGGcACCCCa -3'
miRNA:   3'- uucUCC---UGgCCAUGGUU-UGCC-UGGGG- -5'
29151 3' -55.8 NC_006146.1 + 129093 0.7 0.733281
Target:  5'- aAAGGGGACCGGgugcaaauCCAGGCGGcuauUCUCu -3'
miRNA:   3'- -UUCUCCUGGCCau------GGUUUGCCu---GGGG- -5'
29151 3' -55.8 NC_006146.1 + 54012 0.7 0.742956
Target:  5'- --cAGGGCCGGcACCAggUGGcGCCuCCg -3'
miRNA:   3'- uucUCCUGGCCaUGGUuuGCC-UGG-GG- -5'
29151 3' -55.8 NC_006146.1 + 139130 0.7 0.742956
Target:  5'- -uGGGGGCUGuGgGCCGAACGGGggcucccgucCCCCg -3'
miRNA:   3'- uuCUCCUGGC-CaUGGUUUGCCU----------GGGG- -5'
29151 3' -55.8 NC_006146.1 + 33088 0.7 0.742956
Target:  5'- cAGGuGcACCGG-ACC-GGCGGACCCCc -3'
miRNA:   3'- -UUCuCcUGGCCaUGGuUUGCCUGGGG- -5'
29151 3' -55.8 NC_006146.1 + 57219 0.7 0.742956
Target:  5'- ---cGGGCCGGagGCCGGGCccGGGCCCg -3'
miRNA:   3'- uucuCCUGGCCa-UGGUUUG--CCUGGGg -5'
29151 3' -55.8 NC_006146.1 + 105195 0.7 0.752536
Target:  5'- --cGGGGCCGGggaGCCGGG-GGugCCCg -3'
miRNA:   3'- uucUCCUGGCCa--UGGUUUgCCugGGG- -5'
29151 3' -55.8 NC_006146.1 + 61844 0.7 0.752536
Target:  5'- --uGGGGCUGGUGCCG---GGACuCCCg -3'
miRNA:   3'- uucUCCUGGCCAUGGUuugCCUG-GGG- -5'
29151 3' -55.8 NC_006146.1 + 167876 0.7 0.752536
Target:  5'- cGGAGGugCGGUGagguugcuCCAggGAUGGaaagGCCCCa -3'
miRNA:   3'- uUCUCCugGCCAU--------GGU--UUGCC----UGGGG- -5'
29151 3' -55.8 NC_006146.1 + 143031 0.7 0.762011
Target:  5'- -uGGGGaaGCCGGaguCCAGAgGGGCCCg -3'
miRNA:   3'- uuCUCC--UGGCCau-GGUUUgCCUGGGg -5'
29151 3' -55.8 NC_006146.1 + 146109 0.7 0.762011
Target:  5'- -uGGGGaaGCCGGaguCCAGAgGGGCCCg -3'
miRNA:   3'- uuCUCC--UGGCCau-GGUUUgCCUGGGg -5'
29151 3' -55.8 NC_006146.1 + 149187 0.7 0.762011
Target:  5'- -uGGGGaaGCCGGaguCCAGAgGGGCCCg -3'
miRNA:   3'- uuCUCC--UGGCCau-GGUUUgCCUGGGg -5'
29151 3' -55.8 NC_006146.1 + 152265 0.7 0.762011
Target:  5'- -uGGGGaaGCCGGaguCCAGAgGGGCCCg -3'
miRNA:   3'- uuCUCC--UGGCCau-GGUUUgCCUGGGg -5'
29151 3' -55.8 NC_006146.1 + 158422 0.7 0.762011
Target:  5'- -uGGGGaaGCCGGaguCCAGAgGGGCCCg -3'
miRNA:   3'- uuCUCC--UGGCCau-GGUUUgCCUGGGg -5'
29151 3' -55.8 NC_006146.1 + 155343 0.7 0.762011
Target:  5'- -uGGGGaaGCCGGaguCCAGAgGGGCCCg -3'
miRNA:   3'- uuCUCC--UGGCCau-GGUUUgCCUGGGg -5'
29151 3' -55.8 NC_006146.1 + 167154 0.7 0.762011
Target:  5'- uAGGGGAcccaccCCGGgcugaaggGCCAcGCGGcCCCCa -3'
miRNA:   3'- uUCUCCU------GGCCa-------UGGUuUGCCuGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.