miRNA display CGI


Results 1 - 20 of 200 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29154 5' -75.3 NC_006146.1 + 3006 0.68 0.149679
Target:  5'- gGUGCCCCCgcgaggguCCCCgggCCgCCCCggggCUCCCCCGc -3'
miRNA:   3'- -CACGGGGG--------GGGG---GG-GGGG----GGGGGGGC- -5'
29154 5' -75.3 NC_006146.1 + 3711 0.67 0.166983
Target:  5'- -cGCCCCCCgggaCCCCgggcgcgcgccggCCUCCCgUCCCGa -3'
miRNA:   3'- caCGGGGGGg---GGGG-------------GGGGGGgGGGGC- -5'
29154 5' -75.3 NC_006146.1 + 2779 0.67 0.166983
Target:  5'- -cGCCCCCCgggaCCCCgggcgcgcgccggCCUCCCgUCCCGa -3'
miRNA:   3'- caCGGGGGGg---GGGG-------------GGGGGGgGGGGC- -5'
29154 5' -75.3 NC_006146.1 + 1847 0.67 0.166983
Target:  5'- -cGCCCCCCgggaCCCCgggcgcgcgccggCCUCCCgUCCCGa -3'
miRNA:   3'- caCGGGGGGg---GGGG-------------GGGGGGgGGGGC- -5'
29154 5' -75.3 NC_006146.1 + 915 0.67 0.166983
Target:  5'- -cGCCCCCCgggaCCCCgggcgcgcgccggCCUCCCgUCCCGa -3'
miRNA:   3'- caCGGGGGGg---GGGG-------------GGGGGGgGGGGC- -5'
29154 5' -75.3 NC_006146.1 + 131518 0.67 0.163675
Target:  5'- -gGCCCagaaccaCCCCCUUUCUCaCCCUCCCGg -3'
miRNA:   3'- caCGGGg------GGGGGGGGGGG-GGGGGGGC- -5'
29154 5' -75.3 NC_006146.1 + 103530 0.68 0.16007
Target:  5'- -aGCCCCCCUCCCCgUacucgugggaCCCggaCCCCGa -3'
miRNA:   3'- caCGGGGGGGGGGGgGg---------GGGg--GGGGC- -5'
29154 5' -75.3 NC_006146.1 + 40178 0.68 0.16007
Target:  5'- -aGCCCgCCgCCCUCCUCgUCCUCCUCGg -3'
miRNA:   3'- caCGGG-GG-GGGGGGGGgGGGGGGGGC- -5'
29154 5' -75.3 NC_006146.1 + 113850 0.68 0.156536
Target:  5'- -gGCCCCCUCCCgCCUCaaCCCUggcggcuucgCCCCGg -3'
miRNA:   3'- caCGGGGGGGGGgGGGG--GGGG----------GGGGC- -5'
29154 5' -75.3 NC_006146.1 + 31753 0.67 0.174548
Target:  5'- -cGCCCCCCCgggggacgggagCCCCCguucggcccacagCCCCCaauugacaCCCCa -3'
miRNA:   3'- caCGGGGGGG------------GGGGG-------------GGGGGg-------GGGGc -5'
29154 5' -75.3 NC_006146.1 + 32992 0.67 0.174934
Target:  5'- cUGCCCCCggaaCCCCCggCCCuguccacggggaCCCCCUgCCGg -3'
miRNA:   3'- cACGGGGG----GGGGG--GGG------------GGGGGGgGGC- -5'
29154 5' -75.3 NC_006146.1 + 125950 0.67 0.182819
Target:  5'- -aGUCCCCCggggCCUCCCCgCgCCCCUGg -3'
miRNA:   3'- caCGGGGGGg---GGGGGGGgGgGGGGGC- -5'
29154 5' -75.3 NC_006146.1 + 119660 0.66 0.222762
Target:  5'- -aGCCCCCUCaagcggcuacuccaaCUCCUCagCCCCCCCa -3'
miRNA:   3'- caCGGGGGGGg--------------GGGGGGg-GGGGGGGc -5'
29154 5' -75.3 NC_006146.1 + 160177 0.66 0.217565
Target:  5'- uGUGCCCUCCCCaCUUCUCUUCCCguuaaCCGu -3'
miRNA:   3'- -CACGGGGGGGG-GGGGGGGGGGGg----GGC- -5'
29154 5' -75.3 NC_006146.1 + 119325 0.66 0.217565
Target:  5'- -aGUCCCCCCUUcggccgcgCCgCCUCCCCaCCCa -3'
miRNA:   3'- caCGGGGGGGGG--------GGgGGGGGGG-GGGc -5'
29154 5' -75.3 NC_006146.1 + 113554 0.66 0.212931
Target:  5'- -aGCCUCCCUCaccgacaCCCggggCCCCgCCCCCa -3'
miRNA:   3'- caCGGGGGGGGg------GGG----GGGGgGGGGGc -5'
29154 5' -75.3 NC_006146.1 + 101372 0.66 0.203916
Target:  5'- aUGCCCCCaCCCCCCaUUCCUCaCCacaggCCGa -3'
miRNA:   3'- cACGGGGG-GGGGGG-GGGGGG-GGg----GGC- -5'
29154 5' -75.3 NC_006146.1 + 85331 0.66 0.199534
Target:  5'- cUGCCUCCUgCCaCCCCaCgUgCCCCCGa -3'
miRNA:   3'- cACGGGGGGgGG-GGGG-GgGgGGGGGC- -5'
29154 5' -75.3 NC_006146.1 + 20945 0.67 0.186878
Target:  5'- -gGCCCCCaCUCCCacgccugggcgCCCCUCaaCCCCGa -3'
miRNA:   3'- caCGGGGG-GGGGG-----------GGGGGGggGGGGC- -5'
29154 5' -75.3 NC_006146.1 + 33058 0.67 0.182819
Target:  5'- -cGCCCaCCCaCCCCgagCCCCCCugCCUUCCa -3'
miRNA:   3'- caCGGG-GGG-GGGG---GGGGGG--GGGGGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.