Results 1 - 20 of 171 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29155 | 5' | -55.6 | NC_006146.1 | + | 170419 | 0.67 | 0.886232 |
Target: 5'- gCGGAGGGggGGGUcccgcggggcccggcGC-GUGCCGGGGg -3' miRNA: 3'- gGUCUUUCa-CCCG---------------UGaCACGGUCCCg -5' |
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29155 | 5' | -55.6 | NC_006146.1 | + | 170300 | 0.66 | 0.915358 |
Target: 5'- -gGGAGAGgGGGCaggGCUGgcGCC-GGGCc -3' miRNA: 3'- ggUCUUUCaCCCG---UGACa-CGGuCCCG- -5' |
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29155 | 5' | -55.6 | NC_006146.1 | + | 170171 | 0.66 | 0.931679 |
Target: 5'- gCCGGGggcuGAGgGGGCucccgaggGCgggGCCGGGGCc -3' miRNA: 3'- -GGUCU----UUCaCCCG--------UGacaCGGUCCCG- -5' |
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29155 | 5' | -55.6 | NC_006146.1 | + | 169942 | 1.13 | 0.001875 |
Target: 5'- aCCAGAAAGUGGGCACUGUGCCAGGGCc -3' miRNA: 3'- -GGUCUUUCACCCGUGACACGGUCCCG- -5' |
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29155 | 5' | -55.6 | NC_006146.1 | + | 169704 | 0.68 | 0.857067 |
Target: 5'- cCCGGGcucccccucacGGGUGGGCGCUcagaucggcgcggggGaGCCccGGGGCg -3' miRNA: 3'- -GGUCU-----------UUCACCCGUGA---------------CaCGG--UCCCG- -5' |
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29155 | 5' | -55.6 | NC_006146.1 | + | 169488 | 0.67 | 0.886232 |
Target: 5'- gCGGAGGGggGGGUcccgcggggcccggcGC-GUGCCGGGGg -3' miRNA: 3'- gGUCUUUCa-CCCG---------------UGaCACGGUCCCg -5' |
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29155 | 5' | -55.6 | NC_006146.1 | + | 169369 | 0.66 | 0.915358 |
Target: 5'- -gGGAGAGgGGGCaggGCUGgcGCC-GGGCc -3' miRNA: 3'- ggUCUUUCaCCCG---UGACa-CGGuCCCG- -5' |
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29155 | 5' | -55.6 | NC_006146.1 | + | 169240 | 0.66 | 0.931679 |
Target: 5'- gCCGGGggcuGAGgGGGCucccgaggGCgggGCCGGGGCc -3' miRNA: 3'- -GGUCU----UUCaCCCG--------UGacaCGGUCCCG- -5' |
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29155 | 5' | -55.6 | NC_006146.1 | + | 169010 | 1.13 | 0.001875 |
Target: 5'- aCCAGAAAGUGGGCACUGUGCCAGGGCc -3' miRNA: 3'- -GGUCUUUCACCCGUGACACGGUCCCG- -5' |
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29155 | 5' | -55.6 | NC_006146.1 | + | 168772 | 0.68 | 0.857067 |
Target: 5'- cCCGGGcucccccucacGGGUGGGCGCUcagaucggcgcggggGaGCCccGGGGCg -3' miRNA: 3'- -GGUCU-----------UUCACCCGUGA---------------CaCGG--UCCCG- -5' |
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29155 | 5' | -55.6 | NC_006146.1 | + | 168556 | 0.67 | 0.886232 |
Target: 5'- gCGGAGGGggGGGUcccgcggggcccggcGC-GUGCCGGGGg -3' miRNA: 3'- gGUCUUUCa-CCCG---------------UGaCACGGUCCCg -5' |
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29155 | 5' | -55.6 | NC_006146.1 | + | 168437 | 0.66 | 0.915358 |
Target: 5'- -gGGAGAGgGGGCaggGCUGgcGCC-GGGCc -3' miRNA: 3'- ggUCUUUCaCCCG---UGACa-CGGuCCCG- -5' |
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29155 | 5' | -55.6 | NC_006146.1 | + | 168308 | 0.66 | 0.931679 |
Target: 5'- gCCGGGggcuGAGgGGGCucccgaggGCgggGCCGGGGCc -3' miRNA: 3'- -GGUCU----UUCaCCCG--------UGacaCGGUCCCG- -5' |
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29155 | 5' | -55.6 | NC_006146.1 | + | 168078 | 1.13 | 0.001875 |
Target: 5'- aCCAGAAAGUGGGCACUGUGCCAGGGCc -3' miRNA: 3'- -GGUCUUUCACCCGUGACACGGUCCCG- -5' |
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29155 | 5' | -55.6 | NC_006146.1 | + | 167840 | 0.68 | 0.857067 |
Target: 5'- cCCGGGcucccccucacGGGUGGGCGCUcagaucggcgcggggGaGCCccGGGGCg -3' miRNA: 3'- -GGUCU-----------UUCACCCGUGA---------------CaCGG--UCCCG- -5' |
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29155 | 5' | -55.6 | NC_006146.1 | + | 167624 | 0.67 | 0.886232 |
Target: 5'- gCGGAGGGggGGGUcccgcggggcccggcGC-GUGCCGGGGg -3' miRNA: 3'- gGUCUUUCa-CCCG---------------UGaCACGGUCCCg -5' |
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29155 | 5' | -55.6 | NC_006146.1 | + | 167505 | 0.66 | 0.915358 |
Target: 5'- -gGGAGAGgGGGCaggGCUGgcGCC-GGGCc -3' miRNA: 3'- ggUCUUUCaCCCG---UGACa-CGGuCCCG- -5' |
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29155 | 5' | -55.6 | NC_006146.1 | + | 167376 | 0.66 | 0.931679 |
Target: 5'- gCCGGGggcuGAGgGGGCucccgaggGCgggGCCGGGGCc -3' miRNA: 3'- -GGUCU----UUCaCCCG--------UGacaCGGUCCCG- -5' |
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29155 | 5' | -55.6 | NC_006146.1 | + | 167147 | 1.06 | 0.005518 |
Target: 5'- gUAGAAAGUGGGCACUGUGCCAGGGCc -3' miRNA: 3'- gGUCUUUCACCCGUGACACGGUCCCG- -5' |
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29155 | 5' | -55.6 | NC_006146.1 | + | 166493 | 0.71 | 0.722898 |
Target: 5'- gCUAGAAucgcagcguggugccAGUcGGGCgGCUGUGCCaAGcGGCa -3' miRNA: 3'- -GGUCUU---------------UCA-CCCG-UGACACGG-UC-CCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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