miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29156 3' -56.6 NC_006146.1 + 97684 0.66 0.905403
Target:  5'- gCGCCCUgcucuCGaUGAUcgagaacgccaGGAGCCCCUCg -3'
miRNA:   3'- aGUGGGAac---GC-ACUG-----------CUUCGGGGAGa -5'
29156 3' -56.6 NC_006146.1 + 115291 0.66 0.899138
Target:  5'- gCAUCCggGCGggaGugGucauagauAAGCCCCUCg -3'
miRNA:   3'- aGUGGGaaCGCa--CugC--------UUCGGGGAGa -5'
29156 3' -56.6 NC_006146.1 + 129693 0.66 0.892644
Target:  5'- gCGCCCagUGCccgcgGAUGggGCgCCUCa -3'
miRNA:   3'- aGUGGGa-ACGca---CUGCuuCGgGGAGa -5'
29156 3' -56.6 NC_006146.1 + 153777 0.66 0.892644
Target:  5'- cCACCgUcaUGUugGUGACGAAGCuggaugugCCCUCUu -3'
miRNA:   3'- aGUGGgA--ACG--CACUGCUUCG--------GGGAGA- -5'
29156 3' -56.6 NC_006146.1 + 34948 0.66 0.892644
Target:  5'- gCACCCcgGgGUGACGuGGCaCCC-CUg -3'
miRNA:   3'- aGUGGGaaCgCACUGCuUCG-GGGaGA- -5'
29156 3' -56.6 NC_006146.1 + 138778 0.66 0.892644
Target:  5'- gCACCCcgGgGUGACGuGGCaCCC-CUg -3'
miRNA:   3'- aGUGGGaaCgCACUGCuUCG-GGGaGA- -5'
29156 3' -56.6 NC_006146.1 + 131307 0.66 0.885927
Target:  5'- uUC-CCCaugGCGggggGGCuGGAGUCCCUCUu -3'
miRNA:   3'- -AGuGGGaa-CGCa---CUG-CUUCGGGGAGA- -5'
29156 3' -56.6 NC_006146.1 + 162362 0.66 0.878988
Target:  5'- -aGCgCCUUG-GaGAUGGAGCCCCUUg -3'
miRNA:   3'- agUG-GGAACgCaCUGCUUCGGGGAGa -5'
29156 3' -56.6 NC_006146.1 + 6442 0.67 0.856899
Target:  5'- -gACCCUagguUGCGcGGCGggGUUUCUCa -3'
miRNA:   3'- agUGGGA----ACGCaCUGCuuCGGGGAGa -5'
29156 3' -56.6 NC_006146.1 + 138884 0.67 0.856899
Target:  5'- gCGCCU---CGUccCGAGGCCCCUCUg -3'
miRNA:   3'- aGUGGGaacGCAcuGCUUCGGGGAGA- -5'
29156 3' -56.6 NC_006146.1 + 120278 0.67 0.841164
Target:  5'- aCACCaagcugGUGUGcuCGGAGCCCCUg- -3'
miRNA:   3'- aGUGGgaa---CGCACu-GCUUCGGGGAga -5'
29156 3' -56.6 NC_006146.1 + 130008 0.68 0.833014
Target:  5'- cCGCCCggaucGCa-GACGAGGCCCCg-- -3'
miRNA:   3'- aGUGGGaa---CGcaCUGCUUCGGGGaga -5'
29156 3' -56.6 NC_006146.1 + 41994 0.68 0.833014
Target:  5'- -gACCCgcacagcUGCGUGACGuugccGAGCuacuCCCUCUg -3'
miRNA:   3'- agUGGGa------ACGCACUGC-----UUCG----GGGAGA- -5'
29156 3' -56.6 NC_006146.1 + 160105 0.68 0.824684
Target:  5'- -uGCCCa-GCGUGGCGAccUCCCUCa -3'
miRNA:   3'- agUGGGaaCGCACUGCUucGGGGAGa -5'
29156 3' -56.6 NC_006146.1 + 1704 0.68 0.822151
Target:  5'- gCAgCCgaGCGUGACGAcgggacgccccgccGGCCCCccCUg -3'
miRNA:   3'- aGUgGGaaCGCACUGCU--------------UCGGGGa-GA- -5'
29156 3' -56.6 NC_006146.1 + 773 0.68 0.822151
Target:  5'- gCAgCCgaGCGUGACGAcgggacgccccgccGGCCCCccCUg -3'
miRNA:   3'- aGUgGGaaCGCACUGCU--------------UCGGGGa-GA- -5'
29156 3' -56.6 NC_006146.1 + 3568 0.68 0.822151
Target:  5'- gCAgCCgaGCGUGACGAcgggacgccccgccGGCCCCccCUg -3'
miRNA:   3'- aGUgGGaaCGCACUGCU--------------UCGGGGa-GA- -5'
29156 3' -56.6 NC_006146.1 + 2636 0.68 0.822151
Target:  5'- gCAgCCgaGCGUGACGAcgggacgccccgccGGCCCCccCUg -3'
miRNA:   3'- aGUgGGaaCGCACUGCU--------------UCGGGGa-GA- -5'
29156 3' -56.6 NC_006146.1 + 55251 0.69 0.771374
Target:  5'- gUCGCCCggGCGgcccgGGCGAAGCggCUCg -3'
miRNA:   3'- -AGUGGGaaCGCa----CUGCUUCGggGAGa -5'
29156 3' -56.6 NC_006146.1 + 24037 0.69 0.762011
Target:  5'- gUCcCCCUggcgGgGUGACGcGGCCCCg-- -3'
miRNA:   3'- -AGuGGGAa---CgCACUGCuUCGGGGaga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.