Results 41 - 48 of 48 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 29166 | 3' | -53.3 | NC_006150.1 | + | 77044 | 0.66 | 0.989664 |
|
Target: 5'- aCCGGggUaAUCGUCAGagCAUAGGccauGCg -3' miRNA: 3'- -GGUCuuAgUGGCAGUCg-GUGUCCu---CG- -5' |
|||||||
| 29166 | 3' | -53.3 | NC_006150.1 | + | 107674 | 0.66 | 0.989664 |
|
Target: 5'- uUCGaGGUCGuugUgGUCGGCCGCuggGGGAGCg -3' miRNA: 3'- -GGUcUUAGU---GgCAGUCGGUG---UCCUCG- -5' |
|||||||
| 29166 | 3' | -53.3 | NC_006150.1 | + | 86012 | 0.66 | 0.989664 |
|
Target: 5'- aCAGGuagGCgGcCGGCCccACGGGAGCa -3' miRNA: 3'- gGUCUuagUGgCaGUCGG--UGUCCUCG- -5' |
|||||||
| 29166 | 3' | -53.3 | NC_006150.1 | + | 119886 | 0.66 | 0.9909 |
|
Target: 5'- aCGGGAUCGCUacagcauggccuGUUuGCCGCGGGAc- -3' miRNA: 3'- gGUCUUAGUGG------------CAGuCGGUGUCCUcg -5' |
|||||||
| 29166 | 3' | -53.3 | NC_006150.1 | + | 181901 | 0.66 | 0.9909 |
|
Target: 5'- aCUAG--UCAUCaGUCAgGCCGaGGGAGCg -3' miRNA: 3'- -GGUCuuAGUGG-CAGU-CGGUgUCCUCG- -5' |
|||||||
| 29166 | 3' | -53.3 | NC_006150.1 | + | 88240 | 0.66 | 0.9909 |
|
Target: 5'- uCCAGGGagcgGCCGcgCAGCCcugGCGGGGGg -3' miRNA: 3'- -GGUCUUag--UGGCa-GUCGG---UGUCCUCg -5' |
|||||||
| 29166 | 3' | -53.3 | NC_006150.1 | + | 183515 | 0.66 | 0.9909 |
|
Target: 5'- gCGGAuUCugCGUgGGCUccgguGCGGGGuGCg -3' miRNA: 3'- gGUCUuAGugGCAgUCGG-----UGUCCU-CG- -5' |
|||||||
| 29166 | 3' | -53.3 | NC_006150.1 | + | 132641 | 0.66 | 0.992017 |
|
Target: 5'- cCCA--AUUACCGUCAGUU---GGAGCu -3' miRNA: 3'- -GGUcuUAGUGGCAGUCGGuguCCUCG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home