Results 21 - 40 of 48 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29166 | 3' | -53.3 | NC_006150.1 | + | 69414 | 0.68 | 0.968985 |
Target: 5'- -uGGAGUCGCaCGUCcgcGCCgaGCAGG-GCa -3' miRNA: 3'- ggUCUUAGUG-GCAGu--CGG--UGUCCuCG- -5' |
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29166 | 3' | -53.3 | NC_006150.1 | + | 172225 | 0.68 | 0.971847 |
Target: 5'- cCCAGAu---CCagGUCAGCagauggaaCGCAGGAGCc -3' miRNA: 3'- -GGUCUuaguGG--CAGUCG--------GUGUCCUCG- -5' |
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29166 | 3' | -53.3 | NC_006150.1 | + | 506 | 0.68 | 0.971847 |
Target: 5'- -gGGggUCGCCGg-GGCCGCGGauAGCc -3' miRNA: 3'- ggUCuuAGUGGCagUCGGUGUCc-UCG- -5' |
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29166 | 3' | -53.3 | NC_006150.1 | + | 88335 | 0.67 | 0.974513 |
Target: 5'- gCAGGA-CGCCGUCccauccccccGaCCAgGGGAGCa -3' miRNA: 3'- gGUCUUaGUGGCAGu---------C-GGUgUCCUCG- -5' |
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29166 | 3' | -53.3 | NC_006150.1 | + | 24438 | 0.67 | 0.974513 |
Target: 5'- aCCGGAgaaguugugGUUACaUGUCAcaaCACGGGAGCg -3' miRNA: 3'- -GGUCU---------UAGUG-GCAGUcg-GUGUCCUCG- -5' |
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29166 | 3' | -53.3 | NC_006150.1 | + | 216390 | 0.67 | 0.974513 |
Target: 5'- gCC-GAG-CACCG-CAGCCGCcacGGcGAGCa -3' miRNA: 3'- -GGuCUUaGUGGCaGUCGGUG---UC-CUCG- -5' |
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29166 | 3' | -53.3 | NC_006150.1 | + | 85465 | 0.67 | 0.979286 |
Target: 5'- aUCAGAAUCGgCaUCuGCCuGCAGaGAGCc -3' miRNA: 3'- -GGUCUUAGUgGcAGuCGG-UGUC-CUCG- -5' |
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29166 | 3' | -53.3 | NC_006150.1 | + | 160646 | 0.67 | 0.979286 |
Target: 5'- aUAGcaagCACCGUCA-CCaAUAGGGGCg -3' miRNA: 3'- gGUCuua-GUGGCAGUcGG-UGUCCUCG- -5' |
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29166 | 3' | -53.3 | NC_006150.1 | + | 88487 | 0.67 | 0.979286 |
Target: 5'- gCCAGGG-CugCG-CGGCCGCucccuGGAGa -3' miRNA: 3'- -GGUCUUaGugGCaGUCGGUGu----CCUCg -5' |
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29166 | 3' | -53.3 | NC_006150.1 | + | 91136 | 0.67 | 0.981408 |
Target: 5'- cCCAGGcugcuUCGCCG-CAaCCACAGcAGCa -3' miRNA: 3'- -GGUCUu----AGUGGCaGUcGGUGUCcUCG- -5' |
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29166 | 3' | -53.3 | NC_006150.1 | + | 216081 | 0.67 | 0.983362 |
Target: 5'- cUguGAgAUCACCGUUGGCaaagACAGcGGGCu -3' miRNA: 3'- -GguCU-UAGUGGCAGUCGg---UGUC-CUCG- -5' |
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29166 | 3' | -53.3 | NC_006150.1 | + | 81103 | 0.66 | 0.985157 |
Target: 5'- uCCAGAAacUCGuuGUCuuCguCGGGAGCc -3' miRNA: 3'- -GGUCUU--AGUggCAGucGguGUCCUCG- -5' |
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29166 | 3' | -53.3 | NC_006150.1 | + | 88652 | 0.66 | 0.985157 |
Target: 5'- cCCAGcgcgGCCGUCcGCgCACcgcaGGGAGCa -3' miRNA: 3'- -GGUCuuagUGGCAGuCG-GUG----UCCUCG- -5' |
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29166 | 3' | -53.3 | NC_006150.1 | + | 72884 | 0.66 | 0.985157 |
Target: 5'- aCCGGggUCAUgG-CAaCCACGGGAc- -3' miRNA: 3'- -GGUCuuAGUGgCaGUcGGUGUCCUcg -5' |
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29166 | 3' | -53.3 | NC_006150.1 | + | 32332 | 0.66 | 0.9868 |
Target: 5'- gCGGAAUCACgGuaacuaccuUCAGCUGCcuuauccugaGGGGGCc -3' miRNA: 3'- gGUCUUAGUGgC---------AGUCGGUG----------UCCUCG- -5' |
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29166 | 3' | -53.3 | NC_006150.1 | + | 186007 | 0.66 | 0.9868 |
Target: 5'- aCCGGGAUaacauUCGUCGGUCACAuGAGa -3' miRNA: 3'- -GGUCUUAgu---GGCAGUCGGUGUcCUCg -5' |
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29166 | 3' | -53.3 | NC_006150.1 | + | 208143 | 0.66 | 0.9868 |
Target: 5'- cUCGGGGccCGCCGUUAGgcggaCACuGGGAGCa -3' miRNA: 3'- -GGUCUUa-GUGGCAGUCg----GUG-UCCUCG- -5' |
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29166 | 3' | -53.3 | NC_006150.1 | + | 160494 | 0.66 | 0.9868 |
Target: 5'- gCCAGGAaUAgCGUCA-CCACcuggcaAGGAGCc -3' miRNA: 3'- -GGUCUUaGUgGCAGUcGGUG------UCCUCG- -5' |
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29166 | 3' | -53.3 | NC_006150.1 | + | 23285 | 0.66 | 0.9883 |
Target: 5'- uCUAaAAUCACCGUCuccaccccGUC-CAGGGGCc -3' miRNA: 3'- -GGUcUUAGUGGCAGu-------CGGuGUCCUCG- -5' |
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29166 | 3' | -53.3 | NC_006150.1 | + | 55297 | 0.66 | 0.9883 |
Target: 5'- aCCAGAAUCugaACCGUacCGGUgGgacaAGGGGCc -3' miRNA: 3'- -GGUCUUAG---UGGCA--GUCGgUg---UCCUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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