Results 21 - 40 of 48 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29166 | 3' | -53.3 | NC_006150.1 | + | 88429 | 0.72 | 0.857739 |
Target: 5'- cCCAGAAggGCgGgggcgcgCGGCC-CAGGAGCc -3' miRNA: 3'- -GGUCUUagUGgCa------GUCGGuGUCCUCG- -5' |
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29166 | 3' | -53.3 | NC_006150.1 | + | 88487 | 0.67 | 0.979286 |
Target: 5'- gCCAGGG-CugCG-CGGCCGCucccuGGAGa -3' miRNA: 3'- -GGUCUUaGugGCaGUCGGUGu----CCUCg -5' |
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29166 | 3' | -53.3 | NC_006150.1 | + | 88652 | 0.66 | 0.985157 |
Target: 5'- cCCAGcgcgGCCGUCcGCgCACcgcaGGGAGCa -3' miRNA: 3'- -GGUCuuagUGGCAGuCG-GUG----UCCUCG- -5' |
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29166 | 3' | -53.3 | NC_006150.1 | + | 90824 | 0.78 | 0.544911 |
Target: 5'- uCCAGcacacAUCACCGcggguGCCGCAGGAGCc -3' miRNA: 3'- -GGUCu----UAGUGGCagu--CGGUGUCCUCG- -5' |
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29166 | 3' | -53.3 | NC_006150.1 | + | 91136 | 0.67 | 0.981408 |
Target: 5'- cCCAGGcugcuUCGCCG-CAaCCACAGcAGCa -3' miRNA: 3'- -GGUCUu----AGUGGCaGUcGGUGUCcUCG- -5' |
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29166 | 3' | -53.3 | NC_006150.1 | + | 92467 | 0.72 | 0.842098 |
Target: 5'- aUCAGAAaCACCGUCacAGCgGCgAGGAGg -3' miRNA: 3'- -GGUCUUaGUGGCAG--UCGgUG-UCCUCg -5' |
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29166 | 3' | -53.3 | NC_006150.1 | + | 106265 | 0.69 | 0.955473 |
Target: 5'- aCGGcaacaGCCG-CGGCCGCGGGGGg -3' miRNA: 3'- gGUCuuag-UGGCaGUCGGUGUCCUCg -5' |
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29166 | 3' | -53.3 | NC_006150.1 | + | 107395 | 0.69 | 0.947409 |
Target: 5'- ------cCACCGUCGGCuCACAGuAGCa -3' miRNA: 3'- ggucuuaGUGGCAGUCG-GUGUCcUCG- -5' |
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29166 | 3' | -53.3 | NC_006150.1 | + | 107674 | 0.66 | 0.989664 |
Target: 5'- uUCGaGGUCGuugUgGUCGGCCGCuggGGGAGCg -3' miRNA: 3'- -GGUcUUAGU---GgCAGUCGGUG---UCCUCG- -5' |
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29166 | 3' | -53.3 | NC_006150.1 | + | 118139 | 0.69 | 0.942588 |
Target: 5'- gCCAGAcUCACCGaauGCCgcuuucaACAGGAGa -3' miRNA: 3'- -GGUCUuAGUGGCaguCGG-------UGUCCUCg -5' |
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29166 | 3' | -53.3 | NC_006150.1 | + | 119886 | 0.66 | 0.9909 |
Target: 5'- aCGGGAUCGCUacagcauggccuGUUuGCCGCGGGAc- -3' miRNA: 3'- gGUCUUAGUGG------------CAGuCGGUGUCCUcg -5' |
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29166 | 3' | -53.3 | NC_006150.1 | + | 132641 | 0.66 | 0.992017 |
Target: 5'- cCCA--AUUACCGUCAGUU---GGAGCu -3' miRNA: 3'- -GGUcuUAGUGGCAGUCGGuguCCUCG- -5' |
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29166 | 3' | -53.3 | NC_006150.1 | + | 136194 | 0.69 | 0.955473 |
Target: 5'- uCCAGAcucugcuggcgcucuUCACCGUCAGCUGuggccgcCAGGuuuGCa -3' miRNA: 3'- -GGUCUu--------------AGUGGCAGUCGGU-------GUCCu--CG- -5' |
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29166 | 3' | -53.3 | NC_006150.1 | + | 160494 | 0.66 | 0.9868 |
Target: 5'- gCCAGGAaUAgCGUCA-CCACcuggcaAGGAGCc -3' miRNA: 3'- -GGUCUUaGUgGCAGUcGGUG------UCCUCG- -5' |
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29166 | 3' | -53.3 | NC_006150.1 | + | 160571 | 0.68 | 0.962653 |
Target: 5'- gCCAauagCACCGUCA-CCAUAGG-GCa -3' miRNA: 3'- -GGUcuuaGUGGCAGUcGGUGUCCuCG- -5' |
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29166 | 3' | -53.3 | NC_006150.1 | + | 160609 | 0.7 | 0.905941 |
Target: 5'- aUAGAuaagCACCGUCA-CCAauaaGGGGGCa -3' miRNA: 3'- gGUCUua--GUGGCAGUcGGUg---UCCUCG- -5' |
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29166 | 3' | -53.3 | NC_006150.1 | + | 160646 | 0.67 | 0.979286 |
Target: 5'- aUAGcaagCACCGUCA-CCaAUAGGGGCg -3' miRNA: 3'- gGUCuua-GUGGCAGUcGG-UGUCCUCG- -5' |
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29166 | 3' | -53.3 | NC_006150.1 | + | 169025 | 0.7 | 0.905941 |
Target: 5'- cCCGuGAUCACCGUgGgGUCAguCGGGGGCa -3' miRNA: 3'- -GGUcUUAGUGGCAgU-CGGU--GUCCUCG- -5' |
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29166 | 3' | -53.3 | NC_006150.1 | + | 172225 | 0.68 | 0.971847 |
Target: 5'- cCCAGAu---CCagGUCAGCagauggaaCGCAGGAGCc -3' miRNA: 3'- -GGUCUuaguGG--CAGUCG--------GUGUCCUCG- -5' |
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29166 | 3' | -53.3 | NC_006150.1 | + | 179521 | 0.69 | 0.943037 |
Target: 5'- uCCAGAggUGCCGgagGGCCACAucauGAGCa -3' miRNA: 3'- -GGUCUuaGUGGCag-UCGGUGUc---CUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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