miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29166 3' -53.3 NC_006150.1 + 289 0.7 0.917137
Target:  5'- cCCAG--UCGCCGUCgugccgaGGCCGC-GGAGg -3'
miRNA:   3'- -GGUCuuAGUGGCAG-------UCGGUGuCCUCg -5'
29166 3' -53.3 NC_006150.1 + 506 0.68 0.971847
Target:  5'- -gGGggUCGCCGg-GGCCGCGGauAGCc -3'
miRNA:   3'- ggUCuuAGUGGCagUCGGUGUCc-UCG- -5'
29166 3' -53.3 NC_006150.1 + 23285 0.66 0.9883
Target:  5'- uCUAaAAUCACCGUCuccaccccGUC-CAGGGGCc -3'
miRNA:   3'- -GGUcUUAGUGGCAGu-------CGGuGUCCUCG- -5'
29166 3' -53.3 NC_006150.1 + 23608 1.13 0.004476
Target:  5'- cCCAGAAUCACCGUCAGCCACAGGAGCc -3'
miRNA:   3'- -GGUCUUAGUGGCAGUCGGUGUCCUCG- -5'
29166 3' -53.3 NC_006150.1 + 24438 0.67 0.974513
Target:  5'- aCCGGAgaaguugugGUUACaUGUCAcaaCACGGGAGCg -3'
miRNA:   3'- -GGUCU---------UAGUG-GCAGUcg-GUGUCCUCG- -5'
29166 3' -53.3 NC_006150.1 + 26482 0.69 0.933602
Target:  5'- cCCAGAAaUGCCGUCu-CCGCGcGAGCg -3'
miRNA:   3'- -GGUCUUaGUGGCAGucGGUGUcCUCG- -5'
29166 3' -53.3 NC_006150.1 + 32332 0.66 0.9868
Target:  5'- gCGGAAUCACgGuaacuaccuUCAGCUGCcuuauccugaGGGGGCc -3'
miRNA:   3'- gGUCUUAGUGgC---------AGUCGGUG----------UCCUCG- -5'
29166 3' -53.3 NC_006150.1 + 32918 0.7 0.911938
Target:  5'- gCGGAG-CGCgGUCGGCgGCGGGgaugGGCa -3'
miRNA:   3'- gGUCUUaGUGgCAGUCGgUGUCC----UCG- -5'
29166 3' -53.3 NC_006150.1 + 55297 0.66 0.9883
Target:  5'- aCCAGAAUCugaACCGUacCGGUgGgacaAGGGGCc -3'
miRNA:   3'- -GGUCUUAG---UGGCA--GUCGgUg---UCCUCG- -5'
29166 3' -53.3 NC_006150.1 + 65786 0.75 0.71428
Target:  5'- gCCAGGAUggaguugCACCGUCAGgccaCCACGGcaGAGCg -3'
miRNA:   3'- -GGUCUUA-------GUGGCAGUC----GGUGUC--CUCG- -5'
29166 3' -53.3 NC_006150.1 + 69414 0.68 0.968985
Target:  5'- -uGGAGUCGCaCGUCcgcGCCgaGCAGG-GCa -3'
miRNA:   3'- ggUCUUAGUG-GCAGu--CGG--UGUCCuCG- -5'
29166 3' -53.3 NC_006150.1 + 72884 0.66 0.985157
Target:  5'- aCCGGggUCAUgG-CAaCCACGGGAc- -3'
miRNA:   3'- -GGUCuuAGUGgCaGUcGGUGUCCUcg -5'
29166 3' -53.3 NC_006150.1 + 77044 0.66 0.989664
Target:  5'- aCCGGggUaAUCGUCAGagCAUAGGccauGCg -3'
miRNA:   3'- -GGUCuuAgUGGCAGUCg-GUGUCCu---CG- -5'
29166 3' -53.3 NC_006150.1 + 77509 0.68 0.965923
Target:  5'- uCCAGAAa---CGUCuucGCCAC-GGAGCg -3'
miRNA:   3'- -GGUCUUagugGCAGu--CGGUGuCCUCG- -5'
29166 3' -53.3 NC_006150.1 + 81103 0.66 0.985157
Target:  5'- uCCAGAAacUCGuuGUCuuCguCGGGAGCc -3'
miRNA:   3'- -GGUCUU--AGUggCAGucGguGUCCUCG- -5'
29166 3' -53.3 NC_006150.1 + 85465 0.67 0.979286
Target:  5'- aUCAGAAUCGgCaUCuGCCuGCAGaGAGCc -3'
miRNA:   3'- -GGUCUUAGUgGcAGuCGG-UGUC-CUCG- -5'
29166 3' -53.3 NC_006150.1 + 86012 0.66 0.989664
Target:  5'- aCAGGuagGCgGcCGGCCccACGGGAGCa -3'
miRNA:   3'- gGUCUuagUGgCaGUCGG--UGUCCUCG- -5'
29166 3' -53.3 NC_006150.1 + 86604 0.72 0.856975
Target:  5'- cCCAGAAUCACCGUCGaaucugcGCC-CGacGGCa -3'
miRNA:   3'- -GGUCUUAGUGGCAGU-------CGGuGUccUCG- -5'
29166 3' -53.3 NC_006150.1 + 88240 0.66 0.9909
Target:  5'- uCCAGGGagcgGCCGcgCAGCCcugGCGGGGGg -3'
miRNA:   3'- -GGUCUUag--UGGCa-GUCGG---UGUCCUCg -5'
29166 3' -53.3 NC_006150.1 + 88335 0.67 0.974513
Target:  5'- gCAGGA-CGCCGUCccauccccccGaCCAgGGGAGCa -3'
miRNA:   3'- gGUCUUaGUGGCAGu---------C-GGUgUCCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.