miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29166 3' -53.3 NC_006150.1 + 216390 0.67 0.974513
Target:  5'- gCC-GAG-CACCG-CAGCCGCcacGGcGAGCa -3'
miRNA:   3'- -GGuCUUaGUGGCaGUCGGUG---UC-CUCG- -5'
29166 3' -53.3 NC_006150.1 + 216081 0.67 0.983362
Target:  5'- cUguGAgAUCACCGUUGGCaaagACAGcGGGCu -3'
miRNA:   3'- -GguCU-UAGUGGCAGUCGg---UGUC-CUCG- -5'
29166 3' -53.3 NC_006150.1 + 208143 0.66 0.9868
Target:  5'- cUCGGGGccCGCCGUUAGgcggaCACuGGGAGCa -3'
miRNA:   3'- -GGUCUUa-GUGGCAGUCg----GUG-UCCUCG- -5'
29166 3' -53.3 NC_006150.1 + 206710 0.69 0.943037
Target:  5'- cCCAGc--UACCGUCGGCCGCuccGGAc- -3'
miRNA:   3'- -GGUCuuaGUGGCAGUCGGUGu--CCUcg -5'
29166 3' -53.3 NC_006150.1 + 205896 0.81 0.414794
Target:  5'- aCCGGggUCGCCGUCuuuGCCugggaccuccuCAGGGGUg -3'
miRNA:   3'- -GGUCuuAGUGGCAGu--CGGu----------GUCCUCG- -5'
29166 3' -53.3 NC_006150.1 + 186007 0.66 0.9868
Target:  5'- aCCGGGAUaacauUCGUCGGUCACAuGAGa -3'
miRNA:   3'- -GGUCUUAgu---GGCAGUCGGUGUcCUCg -5'
29166 3' -53.3 NC_006150.1 + 183515 0.66 0.9909
Target:  5'- gCGGAuUCugCGUgGGCUccgguGCGGGGuGCg -3'
miRNA:   3'- gGUCUuAGugGCAgUCGG-----UGUCCU-CG- -5'
29166 3' -53.3 NC_006150.1 + 181901 0.66 0.9909
Target:  5'- aCUAG--UCAUCaGUCAgGCCGaGGGAGCg -3'
miRNA:   3'- -GGUCuuAGUGG-CAGU-CGGUgUCCUCG- -5'
29166 3' -53.3 NC_006150.1 + 179521 0.69 0.943037
Target:  5'- uCCAGAggUGCCGgagGGCCACAucauGAGCa -3'
miRNA:   3'- -GGUCUuaGUGGCag-UCGGUGUc---CUCG- -5'
29166 3' -53.3 NC_006150.1 + 172225 0.68 0.971847
Target:  5'- cCCAGAu---CCagGUCAGCagauggaaCGCAGGAGCc -3'
miRNA:   3'- -GGUCUuaguGG--CAGUCG--------GUGUCCUCG- -5'
29166 3' -53.3 NC_006150.1 + 169025 0.7 0.905941
Target:  5'- cCCGuGAUCACCGUgGgGUCAguCGGGGGCa -3'
miRNA:   3'- -GGUcUUAGUGGCAgU-CGGU--GUCCUCG- -5'
29166 3' -53.3 NC_006150.1 + 160646 0.67 0.979286
Target:  5'- aUAGcaagCACCGUCA-CCaAUAGGGGCg -3'
miRNA:   3'- gGUCuua-GUGGCAGUcGG-UGUCCUCG- -5'
29166 3' -53.3 NC_006150.1 + 160609 0.7 0.905941
Target:  5'- aUAGAuaagCACCGUCA-CCAauaaGGGGGCa -3'
miRNA:   3'- gGUCUua--GUGGCAGUcGGUg---UCCUCG- -5'
29166 3' -53.3 NC_006150.1 + 160571 0.68 0.962653
Target:  5'- gCCAauagCACCGUCA-CCAUAGG-GCa -3'
miRNA:   3'- -GGUcuuaGUGGCAGUcGGUGUCCuCG- -5'
29166 3' -53.3 NC_006150.1 + 160494 0.66 0.9868
Target:  5'- gCCAGGAaUAgCGUCA-CCACcuggcaAGGAGCc -3'
miRNA:   3'- -GGUCUUaGUgGCAGUcGGUG------UCCUCG- -5'
29166 3' -53.3 NC_006150.1 + 136194 0.69 0.955473
Target:  5'- uCCAGAcucugcuggcgcucuUCACCGUCAGCUGuggccgcCAGGuuuGCa -3'
miRNA:   3'- -GGUCUu--------------AGUGGCAGUCGGU-------GUCCu--CG- -5'
29166 3' -53.3 NC_006150.1 + 132641 0.66 0.992017
Target:  5'- cCCA--AUUACCGUCAGUU---GGAGCu -3'
miRNA:   3'- -GGUcuUAGUGGCAGUCGGuguCCUCG- -5'
29166 3' -53.3 NC_006150.1 + 119886 0.66 0.9909
Target:  5'- aCGGGAUCGCUacagcauggccuGUUuGCCGCGGGAc- -3'
miRNA:   3'- gGUCUUAGUGG------------CAGuCGGUGUCCUcg -5'
29166 3' -53.3 NC_006150.1 + 118139 0.69 0.942588
Target:  5'- gCCAGAcUCACCGaauGCCgcuuucaACAGGAGa -3'
miRNA:   3'- -GGUCUuAGUGGCaguCGG-------UGUCCUCg -5'
29166 3' -53.3 NC_006150.1 + 107674 0.66 0.989664
Target:  5'- uUCGaGGUCGuugUgGUCGGCCGCuggGGGAGCg -3'
miRNA:   3'- -GGUcUUAGU---GgCAGUCGGUG---UCCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.