Results 1 - 20 of 48 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29166 | 3' | -53.3 | NC_006150.1 | + | 81103 | 0.66 | 0.985157 |
Target: 5'- uCCAGAAacUCGuuGUCuuCguCGGGAGCc -3' miRNA: 3'- -GGUCUU--AGUggCAGucGguGUCCUCG- -5' |
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29166 | 3' | -53.3 | NC_006150.1 | + | 77509 | 0.68 | 0.965923 |
Target: 5'- uCCAGAAa---CGUCuucGCCAC-GGAGCg -3' miRNA: 3'- -GGUCUUagugGCAGu--CGGUGuCCUCG- -5' |
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29166 | 3' | -53.3 | NC_006150.1 | + | 69414 | 0.68 | 0.968985 |
Target: 5'- -uGGAGUCGCaCGUCcgcGCCgaGCAGG-GCa -3' miRNA: 3'- ggUCUUAGUG-GCAGu--CGG--UGUCCuCG- -5' |
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29166 | 3' | -53.3 | NC_006150.1 | + | 24438 | 0.67 | 0.974513 |
Target: 5'- aCCGGAgaaguugugGUUACaUGUCAcaaCACGGGAGCg -3' miRNA: 3'- -GGUCU---------UAGUG-GCAGUcg-GUGUCCUCG- -5' |
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29166 | 3' | -53.3 | NC_006150.1 | + | 216390 | 0.67 | 0.974513 |
Target: 5'- gCC-GAG-CACCG-CAGCCGCcacGGcGAGCa -3' miRNA: 3'- -GGuCUUaGUGGCaGUCGGUG---UC-CUCG- -5' |
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29166 | 3' | -53.3 | NC_006150.1 | + | 85465 | 0.67 | 0.979286 |
Target: 5'- aUCAGAAUCGgCaUCuGCCuGCAGaGAGCc -3' miRNA: 3'- -GGUCUUAGUgGcAGuCGG-UGUC-CUCG- -5' |
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29166 | 3' | -53.3 | NC_006150.1 | + | 160646 | 0.67 | 0.979286 |
Target: 5'- aUAGcaagCACCGUCA-CCaAUAGGGGCg -3' miRNA: 3'- gGUCuua-GUGGCAGUcGG-UGUCCUCG- -5' |
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29166 | 3' | -53.3 | NC_006150.1 | + | 216081 | 0.67 | 0.983362 |
Target: 5'- cUguGAgAUCACCGUUGGCaaagACAGcGGGCu -3' miRNA: 3'- -GguCU-UAGUGGCAGUCGg---UGUC-CUCG- -5' |
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29166 | 3' | -53.3 | NC_006150.1 | + | 72884 | 0.66 | 0.985157 |
Target: 5'- aCCGGggUCAUgG-CAaCCACGGGAc- -3' miRNA: 3'- -GGUCuuAGUGgCaGUcGGUGUCCUcg -5' |
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29166 | 3' | -53.3 | NC_006150.1 | + | 160571 | 0.68 | 0.962653 |
Target: 5'- gCCAauagCACCGUCA-CCAUAGG-GCa -3' miRNA: 3'- -GGUcuuaGUGGCAGUcGGUGUCCuCG- -5' |
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29166 | 3' | -53.3 | NC_006150.1 | + | 106265 | 0.69 | 0.955473 |
Target: 5'- aCGGcaacaGCCG-CGGCCGCGGGGGg -3' miRNA: 3'- gGUCuuag-UGGCaGUCGGUGUCCUCg -5' |
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29166 | 3' | -53.3 | NC_006150.1 | + | 107395 | 0.69 | 0.947409 |
Target: 5'- ------cCACCGUCGGCuCACAGuAGCa -3' miRNA: 3'- ggucuuaGUGGCAGUCG-GUGUCcUCG- -5' |
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29166 | 3' | -53.3 | NC_006150.1 | + | 65786 | 0.75 | 0.71428 |
Target: 5'- gCCAGGAUggaguugCACCGUCAGgccaCCACGGcaGAGCg -3' miRNA: 3'- -GGUCUUA-------GUGGCAGUC----GGUGUC--CUCG- -5' |
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29166 | 3' | -53.3 | NC_006150.1 | + | 86604 | 0.72 | 0.856975 |
Target: 5'- cCCAGAAUCACCGUCGaaucugcGCC-CGacGGCa -3' miRNA: 3'- -GGUCUUAGUGGCAGU-------CGGuGUccUCG- -5' |
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29166 | 3' | -53.3 | NC_006150.1 | + | 160609 | 0.7 | 0.905941 |
Target: 5'- aUAGAuaagCACCGUCA-CCAauaaGGGGGCa -3' miRNA: 3'- gGUCUua--GUGGCAGUcGGUg---UCCUCG- -5' |
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29166 | 3' | -53.3 | NC_006150.1 | + | 32918 | 0.7 | 0.911938 |
Target: 5'- gCGGAG-CGCgGUCGGCgGCGGGgaugGGCa -3' miRNA: 3'- gGUCUUaGUGgCAGUCGgUGUCC----UCG- -5' |
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29166 | 3' | -53.3 | NC_006150.1 | + | 289 | 0.7 | 0.917137 |
Target: 5'- cCCAG--UCGCCGUCgugccgaGGCCGC-GGAGg -3' miRNA: 3'- -GGUCuuAGUGGCAG-------UCGGUGuCCUCg -5' |
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29166 | 3' | -53.3 | NC_006150.1 | + | 26482 | 0.69 | 0.933602 |
Target: 5'- cCCAGAAaUGCCGUCu-CCGCGcGAGCg -3' miRNA: 3'- -GGUCUUaGUGGCAGucGGUGUcCUCG- -5' |
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29166 | 3' | -53.3 | NC_006150.1 | + | 179521 | 0.69 | 0.943037 |
Target: 5'- uCCAGAggUGCCGgagGGCCACAucauGAGCa -3' miRNA: 3'- -GGUCUuaGUGGCag-UCGGUGUc---CUCG- -5' |
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29166 | 3' | -53.3 | NC_006150.1 | + | 206710 | 0.69 | 0.943037 |
Target: 5'- cCCAGc--UACCGUCGGCCGCuccGGAc- -3' miRNA: 3'- -GGUCuuaGUGGCAGUCGGUGu--CCUcg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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