Results 1 - 20 of 48 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29166 | 3' | -53.3 | NC_006150.1 | + | 23608 | 1.13 | 0.004476 |
Target: 5'- cCCAGAAUCACCGUCAGCCACAGGAGCc -3' miRNA: 3'- -GGUCUUAGUGGCAGUCGGUGUCCUCG- -5' |
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29166 | 3' | -53.3 | NC_006150.1 | + | 91136 | 0.67 | 0.981408 |
Target: 5'- cCCAGGcugcuUCGCCG-CAaCCACAGcAGCa -3' miRNA: 3'- -GGUCUu----AGUGGCaGUcGGUGUCcUCG- -5' |
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29166 | 3' | -53.3 | NC_006150.1 | + | 172225 | 0.68 | 0.971847 |
Target: 5'- cCCAGAu---CCagGUCAGCagauggaaCGCAGGAGCc -3' miRNA: 3'- -GGUCUuaguGG--CAGUCG--------GUGUCCUCG- -5' |
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29166 | 3' | -53.3 | NC_006150.1 | + | 506 | 0.68 | 0.971847 |
Target: 5'- -gGGggUCGCCGg-GGCCGCGGauAGCc -3' miRNA: 3'- ggUCuuAGUGGCagUCGGUGUCc-UCG- -5' |
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29166 | 3' | -53.3 | NC_006150.1 | + | 118139 | 0.69 | 0.942588 |
Target: 5'- gCCAGAcUCACCGaauGCCgcuuucaACAGGAGa -3' miRNA: 3'- -GGUCUuAGUGGCaguCGG-------UGUCCUCg -5' |
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29166 | 3' | -53.3 | NC_006150.1 | + | 169025 | 0.7 | 0.905941 |
Target: 5'- cCCGuGAUCACCGUgGgGUCAguCGGGGGCa -3' miRNA: 3'- -GGUcUUAGUGGCAgU-CGGU--GUCCUCG- -5' |
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29166 | 3' | -53.3 | NC_006150.1 | + | 183515 | 0.66 | 0.9909 |
Target: 5'- gCGGAuUCugCGUgGGCUccgguGCGGGGuGCg -3' miRNA: 3'- gGUCUuAGugGCAgUCGG-----UGUCCU-CG- -5' |
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29166 | 3' | -53.3 | NC_006150.1 | + | 208143 | 0.66 | 0.9868 |
Target: 5'- cUCGGGGccCGCCGUUAGgcggaCACuGGGAGCa -3' miRNA: 3'- -GGUCUUa-GUGGCAGUCg----GUG-UCCUCG- -5' |
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29166 | 3' | -53.3 | NC_006150.1 | + | 88487 | 0.67 | 0.979286 |
Target: 5'- gCCAGGG-CugCG-CGGCCGCucccuGGAGa -3' miRNA: 3'- -GGUCUUaGugGCaGUCGGUGu----CCUCg -5' |
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29166 | 3' | -53.3 | NC_006150.1 | + | 136194 | 0.69 | 0.955473 |
Target: 5'- uCCAGAcucugcuggcgcucuUCACCGUCAGCUGuggccgcCAGGuuuGCa -3' miRNA: 3'- -GGUCUu--------------AGUGGCAGUCGGU-------GUCCu--CG- -5' |
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29166 | 3' | -53.3 | NC_006150.1 | + | 205896 | 0.81 | 0.414794 |
Target: 5'- aCCGGggUCGCCGUCuuuGCCugggaccuccuCAGGGGUg -3' miRNA: 3'- -GGUCuuAGUGGCAGu--CGGu----------GUCCUCG- -5' |
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29166 | 3' | -53.3 | NC_006150.1 | + | 186007 | 0.66 | 0.9868 |
Target: 5'- aCCGGGAUaacauUCGUCGGUCACAuGAGa -3' miRNA: 3'- -GGUCUUAgu---GGCAGUCGGUGUcCUCg -5' |
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29166 | 3' | -53.3 | NC_006150.1 | + | 92467 | 0.72 | 0.842098 |
Target: 5'- aUCAGAAaCACCGUCacAGCgGCgAGGAGg -3' miRNA: 3'- -GGUCUUaGUGGCAG--UCGgUG-UCCUCg -5' |
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29166 | 3' | -53.3 | NC_006150.1 | + | 88335 | 0.67 | 0.974513 |
Target: 5'- gCAGGA-CGCCGUCccauccccccGaCCAgGGGAGCa -3' miRNA: 3'- gGUCUUaGUGGCAGu---------C-GGUgUCCUCG- -5' |
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29166 | 3' | -53.3 | NC_006150.1 | + | 32332 | 0.66 | 0.9868 |
Target: 5'- gCGGAAUCACgGuaacuaccuUCAGCUGCcuuauccugaGGGGGCc -3' miRNA: 3'- gGUCUUAGUGgC---------AGUCGGUG----------UCCUCG- -5' |
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29166 | 3' | -53.3 | NC_006150.1 | + | 88429 | 0.72 | 0.857739 |
Target: 5'- cCCAGAAggGCgGgggcgcgCGGCC-CAGGAGCc -3' miRNA: 3'- -GGUCUUagUGgCa------GUCGGuGUCCUCG- -5' |
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29166 | 3' | -53.3 | NC_006150.1 | + | 88652 | 0.66 | 0.985157 |
Target: 5'- cCCAGcgcgGCCGUCcGCgCACcgcaGGGAGCa -3' miRNA: 3'- -GGUCuuagUGGCAGuCG-GUG----UCCUCG- -5' |
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29166 | 3' | -53.3 | NC_006150.1 | + | 24438 | 0.67 | 0.974513 |
Target: 5'- aCCGGAgaaguugugGUUACaUGUCAcaaCACGGGAGCg -3' miRNA: 3'- -GGUCU---------UAGUG-GCAGUcg-GUGUCCUCG- -5' |
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29166 | 3' | -53.3 | NC_006150.1 | + | 69414 | 0.68 | 0.968985 |
Target: 5'- -uGGAGUCGCaCGUCcgcGCCgaGCAGG-GCa -3' miRNA: 3'- ggUCUUAGUG-GCAGu--CGG--UGUCCuCG- -5' |
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29166 | 3' | -53.3 | NC_006150.1 | + | 77509 | 0.68 | 0.965923 |
Target: 5'- uCCAGAAa---CGUCuucGCCAC-GGAGCg -3' miRNA: 3'- -GGUCUUagugGCAGu--CGGUGuCCUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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