miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29166 3' -53.3 NC_006150.1 + 23608 1.13 0.004476
Target:  5'- cCCAGAAUCACCGUCAGCCACAGGAGCc -3'
miRNA:   3'- -GGUCUUAGUGGCAGUCGGUGUCCUCG- -5'
29166 3' -53.3 NC_006150.1 + 205896 0.81 0.414794
Target:  5'- aCCGGggUCGCCGUCuuuGCCugggaccuccuCAGGGGUg -3'
miRNA:   3'- -GGUCuuAGUGGCAGu--CGGu----------GUCCUCG- -5'
29166 3' -53.3 NC_006150.1 + 90824 0.78 0.544911
Target:  5'- uCCAGcacacAUCACCGcggguGCCGCAGGAGCc -3'
miRNA:   3'- -GGUCu----UAGUGGCagu--CGGUGUCCUCG- -5'
29166 3' -53.3 NC_006150.1 + 65786 0.75 0.71428
Target:  5'- gCCAGGAUggaguugCACCGUCAGgccaCCACGGcaGAGCg -3'
miRNA:   3'- -GGUCUUA-------GUGGCAGUC----GGUGUC--CUCG- -5'
29166 3' -53.3 NC_006150.1 + 92467 0.72 0.842098
Target:  5'- aUCAGAAaCACCGUCacAGCgGCgAGGAGg -3'
miRNA:   3'- -GGUCUUaGUGGCAG--UCGgUG-UCCUCg -5'
29166 3' -53.3 NC_006150.1 + 86604 0.72 0.856975
Target:  5'- cCCAGAAUCACCGUCGaaucugcGCC-CGacGGCa -3'
miRNA:   3'- -GGUCUUAGUGGCAGU-------CGGuGUccUCG- -5'
29166 3' -53.3 NC_006150.1 + 88429 0.72 0.857739
Target:  5'- cCCAGAAggGCgGgggcgcgCGGCC-CAGGAGCc -3'
miRNA:   3'- -GGUCUUagUGgCa------GUCGGuGUCCUCG- -5'
29166 3' -53.3 NC_006150.1 + 160609 0.7 0.905941
Target:  5'- aUAGAuaagCACCGUCA-CCAauaaGGGGGCa -3'
miRNA:   3'- gGUCUua--GUGGCAGUcGGUg---UCCUCG- -5'
29166 3' -53.3 NC_006150.1 + 169025 0.7 0.905941
Target:  5'- cCCGuGAUCACCGUgGgGUCAguCGGGGGCa -3'
miRNA:   3'- -GGUcUUAGUGGCAgU-CGGU--GUCCUCG- -5'
29166 3' -53.3 NC_006150.1 + 32918 0.7 0.911938
Target:  5'- gCGGAG-CGCgGUCGGCgGCGGGgaugGGCa -3'
miRNA:   3'- gGUCUUaGUGgCAGUCGgUGUCC----UCG- -5'
29166 3' -53.3 NC_006150.1 + 289 0.7 0.917137
Target:  5'- cCCAG--UCGCCGUCgugccgaGGCCGC-GGAGg -3'
miRNA:   3'- -GGUCuuAGUGGCAG-------UCGGUGuCCUCg -5'
29166 3' -53.3 NC_006150.1 + 26482 0.69 0.933602
Target:  5'- cCCAGAAaUGCCGUCu-CCGCGcGAGCg -3'
miRNA:   3'- -GGUCUUaGUGGCAGucGGUGUcCUCG- -5'
29166 3' -53.3 NC_006150.1 + 118139 0.69 0.942588
Target:  5'- gCCAGAcUCACCGaauGCCgcuuucaACAGGAGa -3'
miRNA:   3'- -GGUCUuAGUGGCaguCGG-------UGUCCUCg -5'
29166 3' -53.3 NC_006150.1 + 206710 0.69 0.943037
Target:  5'- cCCAGc--UACCGUCGGCCGCuccGGAc- -3'
miRNA:   3'- -GGUCuuaGUGGCAGUCGGUGu--CCUcg -5'
29166 3' -53.3 NC_006150.1 + 179521 0.69 0.943037
Target:  5'- uCCAGAggUGCCGgagGGCCACAucauGAGCa -3'
miRNA:   3'- -GGUCUuaGUGGCag-UCGGUGUc---CUCG- -5'
29166 3' -53.3 NC_006150.1 + 107395 0.69 0.947409
Target:  5'- ------cCACCGUCGGCuCACAGuAGCa -3'
miRNA:   3'- ggucuuaGUGGCAGUCG-GUGUCcUCG- -5'
29166 3' -53.3 NC_006150.1 + 136194 0.69 0.955473
Target:  5'- uCCAGAcucugcuggcgcucuUCACCGUCAGCUGuggccgcCAGGuuuGCa -3'
miRNA:   3'- -GGUCUu--------------AGUGGCAGUCGGU-------GUCCu--CG- -5'
29166 3' -53.3 NC_006150.1 + 106265 0.69 0.955473
Target:  5'- aCGGcaacaGCCG-CGGCCGCGGGGGg -3'
miRNA:   3'- gGUCuuag-UGGCaGUCGGUGUCCUCg -5'
29166 3' -53.3 NC_006150.1 + 160571 0.68 0.962653
Target:  5'- gCCAauagCACCGUCA-CCAUAGG-GCa -3'
miRNA:   3'- -GGUcuuaGUGGCAGUcGGUGUCCuCG- -5'
29166 3' -53.3 NC_006150.1 + 77509 0.68 0.965923
Target:  5'- uCCAGAAa---CGUCuucGCCAC-GGAGCg -3'
miRNA:   3'- -GGUCUUagugGCAGu--CGGUGuCCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.