miRNA display CGI


Results 1 - 20 of 23 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29183 3' -57.1 NC_006150.1 + 88166 0.66 0.927726
Target:  5'- --cCACCGaGGCuGcGAGGCCCCGgugGGCGg -3'
miRNA:   3'- uauGUGGCaCCG-C-CUUUGGGGC---UCGU- -5'
29183 3' -57.1 NC_006150.1 + 583 0.66 0.922455
Target:  5'- -aGgGCCGcguguucuUGGCaGAccgccAACCCCGGGCAg -3'
miRNA:   3'- uaUgUGGC--------ACCGcCU-----UUGGGGCUCGU- -5'
29183 3' -57.1 NC_006150.1 + 103228 0.66 0.916958
Target:  5'- cGUGCGCaGUGGCuGGGAUCCUGcGCGa -3'
miRNA:   3'- -UAUGUGgCACCGcCUUUGGGGCuCGU- -5'
29183 3' -57.1 NC_006150.1 + 216831 0.66 0.911233
Target:  5'- cUGC-CCGcGGCaauGGAGACCaaGAGCAg -3'
miRNA:   3'- uAUGuGGCaCCG---CCUUUGGggCUCGU- -5'
29183 3' -57.1 NC_006150.1 + 91463 0.66 0.905283
Target:  5'- -gGCGCgGUGGaUGGGGuucucaaacACCUCGGGCGg -3'
miRNA:   3'- uaUGUGgCACC-GCCUU---------UGGGGCUCGU- -5'
29183 3' -57.1 NC_006150.1 + 58402 0.66 0.905283
Target:  5'- cUGCAUgaUGUGGCGGu-ACCCUGAucgGCGa -3'
miRNA:   3'- uAUGUG--GCACCGCCuuUGGGGCU---CGU- -5'
29183 3' -57.1 NC_006150.1 + 83131 0.66 0.89911
Target:  5'- aGUAC-UCG-GGaGGAGAuCCCCGAGCGg -3'
miRNA:   3'- -UAUGuGGCaCCgCCUUU-GGGGCUCGU- -5'
29183 3' -57.1 NC_006150.1 + 202877 0.67 0.892716
Target:  5'- -gGCACCuGgaacGCGGgcGCCUCGGGCGg -3'
miRNA:   3'- uaUGUGG-Cac--CGCCuuUGGGGCUCGU- -5'
29183 3' -57.1 NC_006150.1 + 135083 0.67 0.892716
Target:  5'- -gACGCUGggaaGGCGGAAGCUCauGGCGa -3'
miRNA:   3'- uaUGUGGCa---CCGCCUUUGGGgcUCGU- -5'
29183 3' -57.1 NC_006150.1 + 127528 0.67 0.892716
Target:  5'- uGUGCGCCGUgGGCucaaAAACCaaGAGCAa -3'
miRNA:   3'- -UAUGUGGCA-CCGcc--UUUGGggCUCGU- -5'
29183 3' -57.1 NC_006150.1 + 150159 0.67 0.865003
Target:  5'- -cGCACCGUGGCcggcuuccaGAGACCCaucGGCGg -3'
miRNA:   3'- uaUGUGGCACCGc--------CUUUGGGgc-UCGU- -5'
29183 3' -57.1 NC_006150.1 + 220191 0.67 0.865003
Target:  5'- -cACAuCCGUGGCuGGAAuaUCUGAGCGa -3'
miRNA:   3'- uaUGU-GGCACCG-CCUUugGGGCUCGU- -5'
29183 3' -57.1 NC_006150.1 + 216635 0.67 0.857563
Target:  5'- --uCGCCGUGGCGGcugcGGugCUCG-GCAg -3'
miRNA:   3'- uauGUGGCACCGCC----UUugGGGCuCGU- -5'
29183 3' -57.1 NC_006150.1 + 81377 0.68 0.817576
Target:  5'- -gACGCUGcucGCGGGAAagcagcuuuuCCCCGAGCAc -3'
miRNA:   3'- uaUGUGGCac-CGCCUUU----------GGGGCUCGU- -5'
29183 3' -57.1 NC_006150.1 + 857 0.69 0.807348
Target:  5'- cGUGCGCCGggcgccGGCGGuguagacgguguGGCCgCGAGCGc -3'
miRNA:   3'- -UAUGUGGCa-----CCGCCu-----------UUGGgGCUCGU- -5'
29183 3' -57.1 NC_006150.1 + 9124 0.7 0.745687
Target:  5'- uGUACACCGgauucuUGGUGGAAaaGCCCCGuccCAa -3'
miRNA:   3'- -UAUGUGGC------ACCGCCUU--UGGGGCuc-GU- -5'
29183 3' -57.1 NC_006150.1 + 181273 0.7 0.745687
Target:  5'- -gACGCgGagGGCGGGAgaggcggcuGCCCUGGGCGg -3'
miRNA:   3'- uaUGUGgCa-CCGCCUU---------UGGGGCUCGU- -5'
29183 3' -57.1 NC_006150.1 + 149521 0.7 0.742846
Target:  5'- uUGCGCCGUcgccuacgacccgaGGUGGAAGCCCCucGUc -3'
miRNA:   3'- uAUGUGGCA--------------CCGCCUUUGGGGcuCGu -5'
29183 3' -57.1 NC_006150.1 + 136999 0.7 0.714991
Target:  5'- -cGCGCCacucauccuCGGGAACCCCGAGCGa -3'
miRNA:   3'- uaUGUGGcacc-----GCCUUUGGGGCUCGU- -5'
29183 3' -57.1 NC_006150.1 + 182896 0.7 0.707198
Target:  5'- -gAgGCCucGGCGGggGCUCCGGGUAg -3'
miRNA:   3'- uaUgUGGcaCCGCCuuUGGGGCUCGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.