miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29184 5' -55.9 NC_006150.1 + 33201 0.66 0.966476
Target:  5'- uCCGUCuGGGgGGuUUGGuGGGCUUAuUGCg -3'
miRNA:   3'- -GGCAG-UUCgCC-GACCuUCCGAGU-GCG- -5'
29184 5' -55.9 NC_006150.1 + 105330 0.66 0.966476
Target:  5'- gCCGUacucaguuGCGGCUGGcucaguuucuGGCUCA-GCu -3'
miRNA:   3'- -GGCAguu-----CGCCGACCuu--------CCGAGUgCG- -5'
29184 5' -55.9 NC_006150.1 + 132404 0.66 0.966476
Target:  5'- uUGUUuaccaAGGCGGCUcGGAccuauGGGCUgGCGg -3'
miRNA:   3'- gGCAG-----UUCGCCGA-CCU-----UCCGAgUGCg -5'
29184 5' -55.9 NC_006150.1 + 86427 0.66 0.95993
Target:  5'- aCCGUCGaagggGGCGGCgcgccAGGCgCACGg -3'
miRNA:   3'- -GGCAGU-----UCGCCGaccu-UCCGaGUGCg -5'
29184 5' -55.9 NC_006150.1 + 117209 0.66 0.95993
Target:  5'- gUCGUgGAGCGcGUUGGcguAGGCUgACa- -3'
miRNA:   3'- -GGCAgUUCGC-CGACCu--UCCGAgUGcg -5'
29184 5' -55.9 NC_006150.1 + 126528 0.66 0.94854
Target:  5'- -aGUCAgAGCGGCUuGu-GGCUCGuuCGCg -3'
miRNA:   3'- ggCAGU-UCGCCGAcCuuCCGAGU--GCG- -5'
29184 5' -55.9 NC_006150.1 + 75806 0.67 0.94431
Target:  5'- cCCGUgAAGCGcaugcuGCUGGAuaAGGagcagCugGCg -3'
miRNA:   3'- -GGCAgUUCGC------CGACCU--UCCga---GugCG- -5'
29184 5' -55.9 NC_006150.1 + 182558 0.67 0.94431
Target:  5'- --cUCGGGgGGCacccGGggGGUUCGCGg -3'
miRNA:   3'- ggcAGUUCgCCGa---CCuuCCGAGUGCg -5'
29184 5' -55.9 NC_006150.1 + 206958 0.67 0.93986
Target:  5'- gUGUCcgGAGCGGCcgacgguagcUGGGAGcCUCAUGUg -3'
miRNA:   3'- gGCAG--UUCGCCG----------ACCUUCcGAGUGCG- -5'
29184 5' -55.9 NC_006150.1 + 172133 0.67 0.93986
Target:  5'- gUCGUCAGauGCGGCacccauccUGGGcuccgAGGCUCccguCGCu -3'
miRNA:   3'- -GGCAGUU--CGCCG--------ACCU-----UCCGAGu---GCG- -5'
29184 5' -55.9 NC_006150.1 + 135995 0.67 0.93986
Target:  5'- aCG-CGuGCuGCUGGAAGGCa-GCGCu -3'
miRNA:   3'- gGCaGUuCGcCGACCUUCCGagUGCG- -5'
29184 5' -55.9 NC_006150.1 + 147093 0.67 0.93986
Target:  5'- gUCGUguGGUGG-UGGggGGCUgCuuGCg -3'
miRNA:   3'- -GGCAguUCGCCgACCuuCCGA-GugCG- -5'
29184 5' -55.9 NC_006150.1 + 169005 0.67 0.935186
Target:  5'- -aGUCGGG-GGCacGGAAGGgUgACGCg -3'
miRNA:   3'- ggCAGUUCgCCGa-CCUUCCgAgUGCG- -5'
29184 5' -55.9 NC_006150.1 + 130477 0.67 0.935186
Target:  5'- gCGUCAGGCGGCUau--GGCU-GCGg -3'
miRNA:   3'- gGCAGUUCGCCGAccuuCCGAgUGCg -5'
29184 5' -55.9 NC_006150.1 + 92458 0.67 0.935186
Target:  5'- aCCGUCAcAGCGGC-GaGGAGGCggugacCGUg -3'
miRNA:   3'- -GGCAGU-UCGCCGaC-CUUCCGagu---GCG- -5'
29184 5' -55.9 NC_006150.1 + 203423 0.67 0.933741
Target:  5'- aCGUgGGaCGGCUGGGAugcguucacuaucuGGCaCACGCg -3'
miRNA:   3'- gGCAgUUcGCCGACCUU--------------CCGaGUGCG- -5'
29184 5' -55.9 NC_006150.1 + 105699 0.67 0.933254
Target:  5'- uCCGUCGGGCuggacauGGCagcucccgucuaugUGGGAGGUUUuuugguGCGCu -3'
miRNA:   3'- -GGCAGUUCG-------CCG--------------ACCUUCCGAG------UGCG- -5'
29184 5' -55.9 NC_006150.1 + 220183 0.67 0.930289
Target:  5'- gCCG-CAGcuGCGGCUGcGuuGGGC-CACGUa -3'
miRNA:   3'- -GGCaGUU--CGCCGAC-Cu-UCCGaGUGCG- -5'
29184 5' -55.9 NC_006150.1 + 70311 0.67 0.930289
Target:  5'- -aGUCGcgcucGGCGcaGCUGGAAGcGCUCguggcgGCGCu -3'
miRNA:   3'- ggCAGU-----UCGC--CGACCUUC-CGAG------UGCG- -5'
29184 5' -55.9 NC_006150.1 + 216754 0.67 0.923586
Target:  5'- aCGaCAAGUGGUgucgcugcaccgacUGGAGGGgaCAUGCc -3'
miRNA:   3'- gGCaGUUCGCCG--------------ACCUUCCgaGUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.