miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29186 5' -57.3 NC_006150.1 + 752 0.66 0.935163
Target:  5'- cGCGUGugGcGCUcGCUGCGCcGcCUaGCg -3'
miRNA:   3'- -CGCACugCaCGA-CGGCGUGcCuGA-CG- -5'
29186 5' -57.3 NC_006150.1 + 56523 0.66 0.935163
Target:  5'- cGCGcaGACGUGCccaGCUGUgucuuucaGCGGGCgGCu -3'
miRNA:   3'- -CGCa-CUGCACGa--CGGCG--------UGCCUGaCG- -5'
29186 5' -57.3 NC_006150.1 + 88080 0.66 0.930306
Target:  5'- cCG-GACG-GC-GCCGC--GGACUGCg -3'
miRNA:   3'- cGCaCUGCaCGaCGGCGugCCUGACG- -5'
29186 5' -57.3 NC_006150.1 + 214882 0.66 0.929808
Target:  5'- gGCGg---GUGCUGCCGCcucgcgcACGGAgagaaUGCg -3'
miRNA:   3'- -CGCacugCACGACGGCG-------UGCCUg----ACG- -5'
29186 5' -57.3 NC_006150.1 + 55370 0.66 0.925228
Target:  5'- uGCgGUGACcaaGCUGCCguGCACGG--UGCg -3'
miRNA:   3'- -CG-CACUGca-CGACGG--CGUGCCugACG- -5'
29186 5' -57.3 NC_006150.1 + 92672 0.66 0.919929
Target:  5'- cUGUGACGUG-UGCCuu-CGGGgUGCg -3'
miRNA:   3'- cGCACUGCACgACGGcguGCCUgACG- -5'
29186 5' -57.3 NC_006150.1 + 121975 0.67 0.908671
Target:  5'- uGgGUGGCGUGaUGCCGCcCuGAUcaUGCa -3'
miRNA:   3'- -CgCACUGCACgACGGCGuGcCUG--ACG- -5'
29186 5' -57.3 NC_006150.1 + 176186 0.67 0.908671
Target:  5'- uGCG-GACcaugGUGCaggUGCCGaCACG-ACUGCa -3'
miRNA:   3'- -CGCaCUG----CACG---ACGGC-GUGCcUGACG- -5'
29186 5' -57.3 NC_006150.1 + 184094 0.67 0.908671
Target:  5'- gGCGcaUGACGUGUggUGUCaguGCGgGGACUGg -3'
miRNA:   3'- -CGC--ACUGCACG--ACGG---CGUgCCUGACg -5'
29186 5' -57.3 NC_006150.1 + 55179 0.67 0.902713
Target:  5'- uGCaUGACGacgGCUGCgGCucgGGACUGg -3'
miRNA:   3'- -CGcACUGCa--CGACGgCGug-CCUGACg -5'
29186 5' -57.3 NC_006150.1 + 199190 0.67 0.89654
Target:  5'- -gGUGAgcuuCGUG-UGCCacgGCGCGGACUGa -3'
miRNA:   3'- cgCACU----GCACgACGG---CGUGCCUGACg -5'
29186 5' -57.3 NC_006150.1 + 83269 0.67 0.883558
Target:  5'- cGCGUGAC-UGUgGCCGCuaACGG--UGCg -3'
miRNA:   3'- -CGCACUGcACGaCGGCG--UGCCugACG- -5'
29186 5' -57.3 NC_006150.1 + 183870 0.68 0.869041
Target:  5'- aGCG-GugGuUGCaGCgGCgcaggcaACGGGCUGCg -3'
miRNA:   3'- -CGCaCugC-ACGaCGgCG-------UGCCUGACG- -5'
29186 5' -57.3 NC_006150.1 + 88276 0.68 0.86182
Target:  5'- aGCGUG-CGcucgGCUggGCgGCACGGaagccugGCUGCg -3'
miRNA:   3'- -CGCACuGCa---CGA--CGgCGUGCC-------UGACG- -5'
29186 5' -57.3 NC_006150.1 + 155637 0.68 0.855157
Target:  5'- uGUGUGuGCGUGCUGCUgacaguggguGUAauGAUUGCa -3'
miRNA:   3'- -CGCAC-UGCACGACGG----------CGUgcCUGACG- -5'
29186 5' -57.3 NC_006150.1 + 202884 0.68 0.839815
Target:  5'- cGCGUGGCacGCUgaaagacaaGCCGCucagGCGGACcGCu -3'
miRNA:   3'- -CGCACUGcaCGA---------CGGCG----UGCCUGaCG- -5'
29186 5' -57.3 NC_006150.1 + 121018 0.68 0.831879
Target:  5'- -aGUGGCGUGCcGCUGCGCcGccaACUGUu -3'
miRNA:   3'- cgCACUGCACGaCGGCGUGcC---UGACG- -5'
29186 5' -57.3 NC_006150.1 + 188535 0.69 0.818835
Target:  5'- aGCGUagcuacauuugcauuGACGUgcGCUGCuuCGUugGGuACUGCg -3'
miRNA:   3'- -CGCA---------------CUGCA--CGACG--GCGugCC-UGACG- -5'
29186 5' -57.3 NC_006150.1 + 91156 0.69 0.81551
Target:  5'- gGC-UGuuGUGaCUGCCGCACcccaGGCUGCu -3'
miRNA:   3'- -CGcACugCAC-GACGGCGUGc---CUGACG- -5'
29186 5' -57.3 NC_006150.1 + 184222 0.69 0.81551
Target:  5'- --uUGugGUG-UGCCuGCAUGGACUGg -3'
miRNA:   3'- cgcACugCACgACGG-CGUGCCUGACg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.