Results 1 - 20 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29187 | 3' | -50 | NC_006150.1 | + | 120333 | 0.66 | 0.998578 |
Target: 5'- gUCAAUCACGUAcgGCAaguACaaaGCGGGGGu -3' miRNA: 3'- aAGUUGGUGUAU--UGU---UGg--CGCUCCUc -5' |
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29187 | 3' | -50 | NC_006150.1 | + | 88314 | 0.66 | 0.998289 |
Target: 5'- -cCGACCAgGggAGCAggggaggguauGCCGgGGGGAGg -3' miRNA: 3'- aaGUUGGUgUa-UUGU-----------UGGCgCUCCUC- -5' |
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29187 | 3' | -50 | NC_006150.1 | + | 118777 | 0.67 | 0.997953 |
Target: 5'- -aCGGCCucCGggcAGCAGCUGCGAGGuGu -3' miRNA: 3'- aaGUUGGu-GUa--UUGUUGGCGCUCCuC- -5' |
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29187 | 3' | -50 | NC_006150.1 | + | 217261 | 0.67 | 0.997953 |
Target: 5'- uUUUAACCGagucuCAUGcccugugguGCAACUGCGGGGAc -3' miRNA: 3'- -AAGUUGGU-----GUAU---------UGUUGGCGCUCCUc -5' |
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29187 | 3' | -50 | NC_006150.1 | + | 2921 | 0.67 | 0.997916 |
Target: 5'- -aCAACUgccguAUAUGACGGCgggcagaUGCGAGGAGg -3' miRNA: 3'- aaGUUGG-----UGUAUUGUUG-------GCGCUCCUC- -5' |
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29187 | 3' | -50 | NC_006150.1 | + | 77896 | 0.67 | 0.997111 |
Target: 5'- cUUgGACCGCuugcGCAACagacgGCGAGGGGg -3' miRNA: 3'- -AAgUUGGUGuau-UGUUGg----CGCUCCUC- -5' |
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29187 | 3' | -50 | NC_006150.1 | + | 170019 | 0.67 | 0.997111 |
Target: 5'- cUCAcCCACAUAGCGGCuCGCGGc--- -3' miRNA: 3'- aAGUuGGUGUAUUGUUG-GCGCUccuc -5' |
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29187 | 3' | -50 | NC_006150.1 | + | 104338 | 0.67 | 0.996593 |
Target: 5'- -aCAGCCGCGcugggAACAGCCGCGGc--- -3' miRNA: 3'- aaGUUGGUGUa----UUGUUGGCGCUccuc -5' |
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29187 | 3' | -50 | NC_006150.1 | + | 101718 | 0.67 | 0.996001 |
Target: 5'- cUCGAUgACGUAGCAuaagacCCGCuGGGAGc -3' miRNA: 3'- aAGUUGgUGUAUUGUu-----GGCGcUCCUC- -5' |
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29187 | 3' | -50 | NC_006150.1 | + | 119327 | 0.67 | 0.996001 |
Target: 5'- -cCGACCAguuuucCAUGACGGCgUGUGAGGAu -3' miRNA: 3'- aaGUUGGU------GUAUUGUUG-GCGCUCCUc -5' |
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29187 | 3' | -50 | NC_006150.1 | + | 70096 | 0.68 | 0.994563 |
Target: 5'- gUCAugCACGgacUGGCGguggcGCUGCGuGGAGg -3' miRNA: 3'- aAGUugGUGU---AUUGU-----UGGCGCuCCUC- -5' |
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29187 | 3' | -50 | NC_006150.1 | + | 107689 | 0.68 | 0.993701 |
Target: 5'- gUCGGCCGCugggggAGCGACgGcCGGGGAc -3' miRNA: 3'- aAGUUGGUGua----UUGUUGgC-GCUCCUc -5' |
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29187 | 3' | -50 | NC_006150.1 | + | 102063 | 0.68 | 0.993701 |
Target: 5'- gUCGccGCCGCG--GCAACCGCcgcaaAGGAGa -3' miRNA: 3'- aAGU--UGGUGUauUGUUGGCGc----UCCUC- -5' |
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29187 | 3' | -50 | NC_006150.1 | + | 88248 | 0.68 | 0.993701 |
Target: 5'- -gCGGCCGC---GCAGCCcugGCGGGGGGc -3' miRNA: 3'- aaGUUGGUGuauUGUUGG---CGCUCCUC- -5' |
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29187 | 3' | -50 | NC_006150.1 | + | 69368 | 0.68 | 0.993701 |
Target: 5'- gUgAGCCGCA--GCAACCGUG-GGAu -3' miRNA: 3'- aAgUUGGUGUauUGUUGGCGCuCCUc -5' |
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29187 | 3' | -50 | NC_006150.1 | + | 53384 | 0.68 | 0.992733 |
Target: 5'- -aCGACCGCAUGAUA--CG-GAGGAGg -3' miRNA: 3'- aaGUUGGUGUAUUGUugGCgCUCCUC- -5' |
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29187 | 3' | -50 | NC_006150.1 | + | 54520 | 0.69 | 0.990443 |
Target: 5'- --uGGgCACGgugAGCAAUgGCGAGGAGg -3' miRNA: 3'- aagUUgGUGUa--UUGUUGgCGCUCCUC- -5' |
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29187 | 3' | -50 | NC_006150.1 | + | 154579 | 0.69 | 0.985988 |
Target: 5'- -gCGAUgaGCAcGGCGGCCGCGAGGGc -3' miRNA: 3'- aaGUUGg-UGUaUUGUUGGCGCUCCUc -5' |
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29187 | 3' | -50 | NC_006150.1 | + | 32479 | 0.7 | 0.975249 |
Target: 5'- -gCAgcACCAgGUAcCAGCCGCGAGGccAGg -3' miRNA: 3'- aaGU--UGGUgUAUuGUUGGCGCUCC--UC- -5' |
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29187 | 3' | -50 | NC_006150.1 | + | 92467 | 0.71 | 0.969594 |
Target: 5'- aUCAGaaaCAcCGUcACAGCgGCGAGGAGg -3' miRNA: 3'- aAGUUg--GU-GUAuUGUUGgCGCUCCUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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