Results 1 - 20 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29188 | 5' | -58.8 | NC_006150.1 | + | 130726 | 0.66 | 0.868194 |
Target: 5'- cGCAccGCCGCaGCCAUagCCGccugacGCAUCCAg -3' miRNA: 3'- -UGU--CGGCGcCGGUAagGGU------UGUGGGU- -5' |
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29188 | 5' | -58.8 | NC_006150.1 | + | 25130 | 0.66 | 0.83794 |
Target: 5'- aGCuGCCGCaGCU-UUCUCAugguaACACCCAa -3' miRNA: 3'- -UGuCGGCGcCGGuAAGGGU-----UGUGGGU- -5' |
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29188 | 5' | -58.8 | NC_006150.1 | + | 175770 | 0.66 | 0.845781 |
Target: 5'- -aGGCUGC-GCCAUUCCaCAugACUCu -3' miRNA: 3'- ugUCGGCGcCGGUAAGG-GUugUGGGu -5' |
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29188 | 5' | -58.8 | NC_006150.1 | + | 167434 | 0.66 | 0.860914 |
Target: 5'- uGCAGCaCGCGGgauggaacacgaCCAcgcUUUCCAGCACgCAu -3' miRNA: 3'- -UGUCG-GCGCC------------GGU---AAGGGUUGUGgGU- -5' |
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29188 | 5' | -58.8 | NC_006150.1 | + | 2131 | 0.66 | 0.845781 |
Target: 5'- gUAGCCGCGaCCGUacagaacaUCCCAGcCGCCg- -3' miRNA: 3'- uGUCGGCGCcGGUA--------AGGGUU-GUGGgu -5' |
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29188 | 5' | -58.8 | NC_006150.1 | + | 219436 | 0.66 | 0.868194 |
Target: 5'- -uGGUCGCGGgCGUUCCCaAACAUa-- -3' miRNA: 3'- ugUCGGCGCCgGUAAGGG-UUGUGggu -5' |
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29188 | 5' | -58.8 | NC_006150.1 | + | 39671 | 0.67 | 0.804895 |
Target: 5'- gUAGCCGUGGCagauguUUCCCgAAUGCUCGa -3' miRNA: 3'- uGUCGGCGCCGgu----AAGGG-UUGUGGGU- -5' |
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29188 | 5' | -58.8 | NC_006150.1 | + | 174048 | 0.67 | 0.803178 |
Target: 5'- cGCGGCCGCGaGCacgaaccgugUCCCGcaaaACCCAu -3' miRNA: 3'- -UGUCGGCGC-CGgua-------AGGGUug--UGGGU- -5' |
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29188 | 5' | -58.8 | NC_006150.1 | + | 140201 | 0.67 | 0.820912 |
Target: 5'- cGCGGCCuucauucguGCGGCCAUccacaagUCCacgGAgACCCAc -3' miRNA: 3'- -UGUCGG---------CGCCGGUA-------AGGg--UUgUGGGU- -5' |
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29188 | 5' | -58.8 | NC_006150.1 | + | 150159 | 0.68 | 0.760365 |
Target: 5'- cGCA-CCGUGGCCGgcUUCCaGAgACCCAu -3' miRNA: 3'- -UGUcGGCGCCGGU--AAGGgUUgUGGGU- -5' |
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29188 | 5' | -58.8 | NC_006150.1 | + | 109114 | 0.68 | 0.732309 |
Target: 5'- aACAGCCagaauCGGCCGccgagagCCAACGCCCGc -3' miRNA: 3'- -UGUCGGc----GCCGGUaag----GGUUGUGGGU- -5' |
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29188 | 5' | -58.8 | NC_006150.1 | + | 87883 | 0.68 | 0.769516 |
Target: 5'- cAUAGCCGUGGCUug-CaCAcuGCGCCCAc -3' miRNA: 3'- -UGUCGGCGCCGGuaaGgGU--UGUGGGU- -5' |
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29188 | 5' | -58.8 | NC_006150.1 | + | 590 | 0.68 | 0.768606 |
Target: 5'- uCAGCgcuCGCGGCCAcaccgUCuacaccgCCGGCGCCCGg -3' miRNA: 3'- uGUCG---GCGCCGGUa----AG-------GGUUGUGGGU- -5' |
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29188 | 5' | -58.8 | NC_006150.1 | + | 180595 | 0.68 | 0.760365 |
Target: 5'- gGCGcCCGCaGCCGgugUCUUGACGCCCGa -3' miRNA: 3'- -UGUcGGCGcCGGUa--AGGGUUGUGGGU- -5' |
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29188 | 5' | -58.8 | NC_006150.1 | + | 220048 | 0.68 | 0.760365 |
Target: 5'- cCAGCgUGUGGCCAUUUacagaaagguagCCAACGCuCCAc -3' miRNA: 3'- uGUCG-GCGCCGGUAAG------------GGUUGUG-GGU- -5' |
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29188 | 5' | -58.8 | NC_006150.1 | + | 119031 | 0.68 | 0.751108 |
Target: 5'- gGC-GCCGCuGGCCAcgCgCGGCACCUg -3' miRNA: 3'- -UGuCGGCG-CCGGUaaGgGUUGUGGGu -5' |
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29188 | 5' | -58.8 | NC_006150.1 | + | 81405 | 0.68 | 0.778553 |
Target: 5'- -uGGgCGCGGCCAUUCaugggCAGgACCCc -3' miRNA: 3'- ugUCgGCGCCGGUAAGg----GUUgUGGGu -5' |
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29188 | 5' | -58.8 | NC_006150.1 | + | 147602 | 0.68 | 0.760365 |
Target: 5'- uCGGCCGCGGCUuuugCCguGC-CCCu -3' miRNA: 3'- uGUCGGCGCCGGuaa-GGguUGuGGGu -5' |
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29188 | 5' | -58.8 | NC_006150.1 | + | 217191 | 0.69 | 0.707395 |
Target: 5'- aACAGaCCGCGGgaucUCAUcCCCAcgcuucaugacucguGCACCCAa -3' miRNA: 3'- -UGUC-GGCGCC----GGUAaGGGU---------------UGUGGGU- -5' |
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29188 | 5' | -58.8 | NC_006150.1 | + | 116249 | 0.69 | 0.693804 |
Target: 5'- cGCAGCCGgcguggauaGGCCGcaaUUCCuCGACACCgAg -3' miRNA: 3'- -UGUCGGCg--------CCGGU---AAGG-GUUGUGGgU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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