Results 1 - 20 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29188 | 5' | -58.8 | NC_006150.1 | + | 590 | 0.68 | 0.768606 |
Target: 5'- uCAGCgcuCGCGGCCAcaccgUCuacaccgCCGGCGCCCGg -3' miRNA: 3'- uGUCG---GCGCCGGUa----AG-------GGUUGUGGGU- -5' |
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29188 | 5' | -58.8 | NC_006150.1 | + | 1897 | 0.76 | 0.338739 |
Target: 5'- uACGGUCGCGGCuacgguuaccgcgCAUUCCCAGguCCCGa -3' miRNA: 3'- -UGUCGGCGCCG-------------GUAAGGGUUguGGGU- -5' |
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29188 | 5' | -58.8 | NC_006150.1 | + | 2131 | 0.66 | 0.845781 |
Target: 5'- gUAGCCGCGaCCGUacagaacaUCCCAGcCGCCg- -3' miRNA: 3'- uGUCGGCGCcGGUA--------AGGGUU-GUGGgu -5' |
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29188 | 5' | -58.8 | NC_006150.1 | + | 25130 | 0.66 | 0.83794 |
Target: 5'- aGCuGCCGCaGCU-UUCUCAugguaACACCCAa -3' miRNA: 3'- -UGuCGGCGcCGGuAAGGGU-----UGUGGGU- -5' |
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29188 | 5' | -58.8 | NC_006150.1 | + | 39671 | 0.67 | 0.804895 |
Target: 5'- gUAGCCGUGGCagauguUUCCCgAAUGCUCGa -3' miRNA: 3'- uGUCGGCGCCGgu----AAGGG-UUGUGGGU- -5' |
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29188 | 5' | -58.8 | NC_006150.1 | + | 81405 | 0.68 | 0.778553 |
Target: 5'- -uGGgCGCGGCCAUUCaugggCAGgACCCc -3' miRNA: 3'- ugUCgGCGCCGGUAAGg----GUUgUGGGu -5' |
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29188 | 5' | -58.8 | NC_006150.1 | + | 87838 | 0.69 | 0.693804 |
Target: 5'- cGCAGuCCGCGGCgCcgUCCgGGCAaucgCCAg -3' miRNA: 3'- -UGUC-GGCGCCG-GuaAGGgUUGUg---GGU- -5' |
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29188 | 5' | -58.8 | NC_006150.1 | + | 87883 | 0.68 | 0.769516 |
Target: 5'- cAUAGCCGUGGCUug-CaCAcuGCGCCCAc -3' miRNA: 3'- -UGUCGGCGCCGGuaaGgGU--UGUGGGU- -5' |
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29188 | 5' | -58.8 | NC_006150.1 | + | 88627 | 0.69 | 0.713186 |
Target: 5'- cGCAGCCGCccgggacgaggaGGCCA---CCAGCGCCa- -3' miRNA: 3'- -UGUCGGCG------------CCGGUaagGGUUGUGGgu -5' |
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29188 | 5' | -58.8 | NC_006150.1 | + | 90881 | 0.71 | 0.605107 |
Target: 5'- -gGGUCGCGGCCAUcuccgCCCugAGCACUCu -3' miRNA: 3'- ugUCGGCGCCGGUAa----GGG--UUGUGGGu -5' |
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29188 | 5' | -58.8 | NC_006150.1 | + | 104088 | 0.87 | 0.069143 |
Target: 5'- aAUGGCCGCGGCUGUUCCCAgcgcggcuguggcuGCACCCAa -3' miRNA: 3'- -UGUCGGCGCCGGUAAGGGU--------------UGUGGGU- -5' |
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29188 | 5' | -58.8 | NC_006150.1 | + | 104324 | 1.08 | 0.002571 |
Target: 5'- aACAGCCGCGGCCAUUCCCAACACCCAg -3' miRNA: 3'- -UGUCGGCGCCGGUAAGGGUUGUGGGU- -5' |
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29188 | 5' | -58.8 | NC_006150.1 | + | 105191 | 0.71 | 0.573668 |
Target: 5'- -aGGCCGUGGCCucagccaaagCCCugcacACACCCAc -3' miRNA: 3'- ugUCGGCGCCGGuaa-------GGGu----UGUGGGU- -5' |
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29188 | 5' | -58.8 | NC_006150.1 | + | 106506 | 0.76 | 0.339475 |
Target: 5'- cGCGGCCGCGGCUGUUgCCGucagcugaGCCCGc -3' miRNA: 3'- -UGUCGGCGCCGGUAAgGGUug------UGGGU- -5' |
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29188 | 5' | -58.8 | NC_006150.1 | + | 109114 | 0.68 | 0.732309 |
Target: 5'- aACAGCCagaauCGGCCGccgagagCCAACGCCCGc -3' miRNA: 3'- -UGUCGGc----GCCGGUaag----GGUUGUGGGU- -5' |
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29188 | 5' | -58.8 | NC_006150.1 | + | 116249 | 0.69 | 0.693804 |
Target: 5'- cGCAGCCGgcguggauaGGCCGcaaUUCCuCGACACCgAg -3' miRNA: 3'- -UGUCGGCg--------CCGGU---AAGG-GUUGUGGgU- -5' |
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29188 | 5' | -58.8 | NC_006150.1 | + | 116687 | 0.75 | 0.372998 |
Target: 5'- uGCGGUCGCccuucucgcguuaccGGCCGguugUCCCAACACCUu -3' miRNA: 3'- -UGUCGGCG---------------CCGGUa---AGGGUUGUGGGu -5' |
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29188 | 5' | -58.8 | NC_006150.1 | + | 116892 | 0.7 | 0.624867 |
Target: 5'- aACGGCUGCuGcGCCAUca-CAGCACCCAa -3' miRNA: 3'- -UGUCGGCG-C-CGGUAaggGUUGUGGGU- -5' |
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29188 | 5' | -58.8 | NC_006150.1 | + | 119031 | 0.68 | 0.751108 |
Target: 5'- gGC-GCCGCuGGCCAcgCgCGGCACCUg -3' miRNA: 3'- -UGuCGGCG-CCGGUaaGgGUUGUGGGu -5' |
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29188 | 5' | -58.8 | NC_006150.1 | + | 119118 | 0.7 | 0.624867 |
Target: 5'- cGCAGCCGaGGCCAgggCCGucugaaggaaguACACCCAu -3' miRNA: 3'- -UGUCGGCgCCGGUaagGGU------------UGUGGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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