miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29188 5' -58.8 NC_006150.1 + 104088 0.87 0.069143
Target:  5'- aAUGGCCGCGGCUGUUCCCAgcgcggcuguggcuGCACCCAa -3'
miRNA:   3'- -UGUCGGCGCCGGUAAGGGU--------------UGUGGGU- -5'
29188 5' -58.8 NC_006150.1 + 219436 0.66 0.868194
Target:  5'- -uGGUCGCGGgCGUUCCCaAACAUa-- -3'
miRNA:   3'- ugUCGGCGCCgGUAAGGG-UUGUGggu -5'
29188 5' -58.8 NC_006150.1 + 167434 0.66 0.860914
Target:  5'- uGCAGCaCGCGGgauggaacacgaCCAcgcUUUCCAGCACgCAu -3'
miRNA:   3'- -UGUCG-GCGCC------------GGU---AAGGGUUGUGgGU- -5'
29188 5' -58.8 NC_006150.1 + 25130 0.66 0.83794
Target:  5'- aGCuGCCGCaGCU-UUCUCAugguaACACCCAa -3'
miRNA:   3'- -UGuCGGCGcCGGuAAGGGU-----UGUGGGU- -5'
29188 5' -58.8 NC_006150.1 + 87883 0.68 0.769516
Target:  5'- cAUAGCCGUGGCUug-CaCAcuGCGCCCAc -3'
miRNA:   3'- -UGUCGGCGCCGGuaaGgGU--UGUGGGU- -5'
29188 5' -58.8 NC_006150.1 + 590 0.68 0.768606
Target:  5'- uCAGCgcuCGCGGCCAcaccgUCuacaccgCCGGCGCCCGg -3'
miRNA:   3'- uGUCG---GCGCCGGUa----AG-------GGUUGUGGGU- -5'
29188 5' -58.8 NC_006150.1 + 180595 0.68 0.760365
Target:  5'- gGCGcCCGCaGCCGgugUCUUGACGCCCGa -3'
miRNA:   3'- -UGUcGGCGcCGGUa--AGGGUUGUGGGU- -5'
29188 5' -58.8 NC_006150.1 + 220048 0.68 0.760365
Target:  5'- cCAGCgUGUGGCCAUUUacagaaagguagCCAACGCuCCAc -3'
miRNA:   3'- uGUCG-GCGCCGGUAAG------------GGUUGUG-GGU- -5'
29188 5' -58.8 NC_006150.1 + 119031 0.68 0.751108
Target:  5'- gGC-GCCGCuGGCCAcgCgCGGCACCUg -3'
miRNA:   3'- -UGuCGGCG-CCGGUaaGgGUUGUGGGu -5'
29188 5' -58.8 NC_006150.1 + 88627 0.69 0.713186
Target:  5'- cGCAGCCGCccgggacgaggaGGCCA---CCAGCGCCa- -3'
miRNA:   3'- -UGUCGGCG------------CCGGUaagGGUUGUGGgu -5'
29188 5' -58.8 NC_006150.1 + 1897 0.76 0.338739
Target:  5'- uACGGUCGCGGCuacgguuaccgcgCAUUCCCAGguCCCGa -3'
miRNA:   3'- -UGUCGGCGCCG-------------GUAAGGGUUguGGGU- -5'
29188 5' -58.8 NC_006150.1 + 207642 0.71 0.569762
Target:  5'- gGCGGCC-CGGCCAguacugcagaacgCCCAACACuuCCAa -3'
miRNA:   3'- -UGUCGGcGCCGGUaa-----------GGGUUGUG--GGU- -5'
29188 5' -58.8 NC_006150.1 + 119118 0.7 0.624867
Target:  5'- cGCAGCCGaGGCCAgggCCGucugaaggaaguACACCCAu -3'
miRNA:   3'- -UGUCGGCgCCGGUaagGGU------------UGUGGGU- -5'
29188 5' -58.8 NC_006150.1 + 154590 0.7 0.664392
Target:  5'- gGCGGCCGCgagGGCCAgaacgugCCCggUGCCa- -3'
miRNA:   3'- -UGUCGGCG---CCGGUaa-----GGGuuGUGGgu -5'
29188 5' -58.8 NC_006150.1 + 87838 0.69 0.693804
Target:  5'- cGCAGuCCGCGGCgCcgUCCgGGCAaucgCCAg -3'
miRNA:   3'- -UGUC-GGCGCCG-GuaAGGgUUGUg---GGU- -5'
29188 5' -58.8 NC_006150.1 + 217191 0.69 0.707395
Target:  5'- aACAGaCCGCGGgaucUCAUcCCCAcgcuucaugacucguGCACCCAa -3'
miRNA:   3'- -UGUC-GGCGCC----GGUAaGGGU---------------UGUGGGU- -5'
29188 5' -58.8 NC_006150.1 + 130726 0.66 0.868194
Target:  5'- cGCAccGCCGCaGCCAUagCCGccugacGCAUCCAg -3'
miRNA:   3'- -UGU--CGGCGcCGGUAagGGU------UGUGGGU- -5'
29188 5' -58.8 NC_006150.1 + 106506 0.76 0.339475
Target:  5'- cGCGGCCGCGGCUGUUgCCGucagcugaGCCCGc -3'
miRNA:   3'- -UGUCGGCGCCGGUAAgGGUug------UGGGU- -5'
29188 5' -58.8 NC_006150.1 + 116687 0.75 0.372998
Target:  5'- uGCGGUCGCccuucucgcguuaccGGCCGguugUCCCAACACCUu -3'
miRNA:   3'- -UGUCGGCG---------------CCGGUa---AGGGUUGUGGGu -5'
29188 5' -58.8 NC_006150.1 + 214721 0.72 0.527307
Target:  5'- cACGGCCGgGGCgCA-UCCCAGCgugAUCCAc -3'
miRNA:   3'- -UGUCGGCgCCG-GUaAGGGUUG---UGGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.