miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29191 3' -48.3 NC_006150.1 + 77343 0.66 0.999922
Target:  5'- aGCGAAUgccucgauGGAUGGCGGUggcgCAGGUaaaggaCACg -3'
miRNA:   3'- -UGUUUG--------UUUGCCGCCAa---GUUCAg-----GUG- -5'
29191 3' -48.3 NC_006150.1 + 149245 0.66 0.999922
Target:  5'- -gGAGgAGGCGGCGGgcgaCGAGgggcuUCCACc -3'
miRNA:   3'- ugUUUgUUUGCCGCCaa--GUUC-----AGGUG- -5'
29191 3' -48.3 NC_006150.1 + 127855 0.66 0.999922
Target:  5'- aGCGAACGugUGGCGGcagCGAaauUCCACc -3'
miRNA:   3'- -UGUUUGUuuGCCGCCaa-GUUc--AGGUG- -5'
29191 3' -48.3 NC_006150.1 + 107617 0.66 0.999898
Target:  5'- gGCGacGACGAuguuugaGGCGGUUCAcuAGUcaCCACc -3'
miRNA:   3'- -UGU--UUGUUug-----CCGCCAAGU--UCA--GGUG- -5'
29191 3' -48.3 NC_006150.1 + 87826 0.66 0.999867
Target:  5'- -gGAGCu--CGGUGGcgCA-GUCCGCg -3'
miRNA:   3'- ugUUUGuuuGCCGCCaaGUuCAGGUG- -5'
29191 3' -48.3 NC_006150.1 + 205314 0.66 0.999867
Target:  5'- -gAGACAAGCGGCGGagCuGGUUgugaaCACu -3'
miRNA:   3'- ugUUUGUUUGCCGCCaaGuUCAG-----GUG- -5'
29191 3' -48.3 NC_006150.1 + 219027 0.66 0.999829
Target:  5'- uGCAGAU--GCGGCGuugcaugaccGUaUUAGGUCCGCg -3'
miRNA:   3'- -UGUUUGuuUGCCGC----------CA-AGUUCAGGUG- -5'
29191 3' -48.3 NC_006150.1 + 132065 0.66 0.999801
Target:  5'- gACAGGCAGucGCGGCGuGUuugaacagcagcgacUCAGGgCCAUu -3'
miRNA:   3'- -UGUUUGUU--UGCCGC-CA---------------AGUUCaGGUG- -5'
29191 3' -48.3 NC_006150.1 + 3967 0.67 0.999722
Target:  5'- gGCGGcuGCuauuGGCGGUcaGGUUCGAGUacagCCACg -3'
miRNA:   3'- -UGUU--UGu---UUGCCG--CCAAGUUCA----GGUG- -5'
29191 3' -48.3 NC_006150.1 + 55218 0.67 0.999715
Target:  5'- aACA-GCAGAgGGCGGUggcggucaccaauUCAGGcgCCAUg -3'
miRNA:   3'- -UGUuUGUUUgCCGCCA-------------AGUUCa-GGUG- -5'
29191 3' -48.3 NC_006150.1 + 102368 0.67 0.999715
Target:  5'- cCGAACGcgugaccuucugaGGCGGCGcUUCGGGcCCACc -3'
miRNA:   3'- uGUUUGU-------------UUGCCGCcAAGUUCaGGUG- -5'
29191 3' -48.3 NC_006150.1 + 154578 0.67 0.999649
Target:  5'- aGCGAugAGcACGGCGGccgCGAGggCCAg -3'
miRNA:   3'- -UGUUugUU-UGCCGCCaa-GUUCa-GGUg -5'
29191 3' -48.3 NC_006150.1 + 105802 0.67 0.999649
Target:  5'- --uGACAGAUGGCuGcgCGAGUCaCGCg -3'
miRNA:   3'- uguUUGUUUGCCGcCaaGUUCAG-GUG- -5'
29191 3' -48.3 NC_006150.1 + 120175 0.67 0.99956
Target:  5'- aACGAAguAACGGCGGaUUUuuuuGG-CCGCg -3'
miRNA:   3'- -UGUUUguUUGCCGCC-AAGu---UCaGGUG- -5'
29191 3' -48.3 NC_006150.1 + 129595 0.67 0.999321
Target:  5'- cGCGAGCAAaaGCuGCGG----GGUCCACa -3'
miRNA:   3'- -UGUUUGUU--UGcCGCCaaguUCAGGUG- -5'
29191 3' -48.3 NC_006150.1 + 46368 0.67 0.999262
Target:  5'- gACcAACAAGUGGCGGUgcucaucggaaaaCAAGUCCGg -3'
miRNA:   3'- -UGuUUGUUUGCCGCCAa------------GUUCAGGUg -5'
29191 3' -48.3 NC_006150.1 + 88413 0.68 0.999165
Target:  5'- cGCGGACGGccGCGcugggucugccGCGGUUCcGGcUCCACg -3'
miRNA:   3'- -UGUUUGUU--UGC-----------CGCCAAGuUC-AGGUG- -5'
29191 3' -48.3 NC_006150.1 + 24428 0.68 0.998979
Target:  5'- uAUAGAucCAGACGGggucaGGUUUAGGUCgCACa -3'
miRNA:   3'- -UGUUU--GUUUGCCg----CCAAGUUCAG-GUG- -5'
29191 3' -48.3 NC_006150.1 + 23767 0.68 0.998979
Target:  5'- -gGGAUGGAUGGCGGUcugccgUCAAucuccgaucgucGUCCACg -3'
miRNA:   3'- ugUUUGUUUGCCGCCA------AGUU------------CAGGUG- -5'
29191 3' -48.3 NC_006150.1 + 113965 0.68 0.998979
Target:  5'- cCGAGCuGACGauacCGG-UCAAGUCCGCc -3'
miRNA:   3'- uGUUUGuUUGCc---GCCaAGUUCAGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.