miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29193 3' -57.9 NC_006150.1 + 110770 1.07 0.003645
Target:  5'- gGAUGCCACACGGCGUGCACCACACCGc -3'
miRNA:   3'- -CUACGGUGUGCCGCACGUGGUGUGGC- -5'
29193 3' -57.9 NC_006150.1 + 138363 0.75 0.418802
Target:  5'- cGAUGCCGCaACGGUGUuucaACCGCAUCGa -3'
miRNA:   3'- -CUACGGUG-UGCCGCAcg--UGGUGUGGC- -5'
29193 3' -57.9 NC_006150.1 + 185106 0.75 0.427334
Target:  5'- uGGUGCUugGCGGCGuUGCGCUGCAgCu -3'
miRNA:   3'- -CUACGGugUGCCGC-ACGUGGUGUgGc -5'
29193 3' -57.9 NC_006150.1 + 147795 0.72 0.595252
Target:  5'- cGGUGCCugGaCGGUGaggGCACCACgACUGc -3'
miRNA:   3'- -CUACGGugU-GCCGCa--CGUGGUG-UGGC- -5'
29193 3' -57.9 NC_006150.1 + 119175 0.72 0.614981
Target:  5'- --aGCUgaGCGCGGCGUGCcucaCGCACCu -3'
miRNA:   3'- cuaCGG--UGUGCCGCACGug--GUGUGGc -5'
29193 3' -57.9 NC_006150.1 + 1001 0.71 0.624867
Target:  5'- --cGCUAgGCGGCGcagcgaGCGCCACACgCGg -3'
miRNA:   3'- cuaCGGUgUGCCGCa-----CGUGGUGUG-GC- -5'
29193 3' -57.9 NC_006150.1 + 92681 0.71 0.624867
Target:  5'- aGGUaCgAgGCGGCGUGCacGCCGCACCa -3'
miRNA:   3'- -CUAcGgUgUGCCGCACG--UGGUGUGGc -5'
29193 3' -57.9 NC_006150.1 + 114034 0.71 0.664392
Target:  5'- --cGCUGCACGacuGCGUGuCGCUACACCu -3'
miRNA:   3'- cuaCGGUGUGC---CGCAC-GUGGUGUGGc -5'
29193 3' -57.9 NC_006150.1 + 195543 0.7 0.67423
Target:  5'- --cGCCAUguACGGCGUGUAUCGaacaGCCa -3'
miRNA:   3'- cuaCGGUG--UGCCGCACGUGGUg---UGGc -5'
29193 3' -57.9 NC_006150.1 + 124971 0.7 0.684037
Target:  5'- --aGCCACGCGGCu--CGCUAUGCCGa -3'
miRNA:   3'- cuaCGGUGUGCCGcacGUGGUGUGGC- -5'
29193 3' -57.9 NC_006150.1 + 160403 0.7 0.684037
Target:  5'- cAUGCCACugGCGGCcaGCACCGuggguaguauCACCGa -3'
miRNA:   3'- cUACGGUG--UGCCGcaCGUGGU----------GUGGC- -5'
29193 3' -57.9 NC_006150.1 + 181197 0.7 0.693804
Target:  5'- cGGUGgCGCgaagcgaguuuGCGGCGUGCACCcgugcCACUGa -3'
miRNA:   3'- -CUACgGUG-----------UGCCGCACGUGGu----GUGGC- -5'
29193 3' -57.9 NC_006150.1 + 198991 0.7 0.703523
Target:  5'- gGGUGCUAUuuuUGGCGUGCuCCAC-CCa -3'
miRNA:   3'- -CUACGGUGu--GCCGCACGuGGUGuGGc -5'
29193 3' -57.9 NC_006150.1 + 1161 0.7 0.722784
Target:  5'- cAUGUCACAcacuccCGGCGccUGCGCCaACACCu -3'
miRNA:   3'- cUACGGUGU------GCCGC--ACGUGG-UGUGGc -5'
29193 3' -57.9 NC_006150.1 + 69478 0.69 0.751108
Target:  5'- --cGCaCACGCGGCGUugagGC-CCaACACCGc -3'
miRNA:   3'- cuaCG-GUGUGCCGCA----CGuGG-UGUGGC- -5'
29193 3' -57.9 NC_006150.1 + 1789 0.69 0.778553
Target:  5'- uGGUGCCuCugGGgaGUGCACgCACACa- -3'
miRNA:   3'- -CUACGGuGugCCg-CACGUG-GUGUGgc -5'
29193 3' -57.9 NC_006150.1 + 62457 0.68 0.787467
Target:  5'- -uUGCCGCucaucugaaGCGGacuGUGUuCCACGCCGg -3'
miRNA:   3'- cuACGGUG---------UGCCg--CACGuGGUGUGGC- -5'
29193 3' -57.9 NC_006150.1 + 83531 0.68 0.787467
Target:  5'- --gGCgGC-CGGCGU-CAUCGCACCGu -3'
miRNA:   3'- cuaCGgUGuGCCGCAcGUGGUGUGGC- -5'
29193 3' -57.9 NC_006150.1 + 119277 0.68 0.802317
Target:  5'- aGGUGCCGCGCGuggccaGCG-GCGCCggaaugcccaccucACGCCa -3'
miRNA:   3'- -CUACGGUGUGC------CGCaCGUGG--------------UGUGGc -5'
29193 3' -57.9 NC_006150.1 + 21832 0.68 0.813394
Target:  5'- uAUGuUUACACGGCGUuaccGUACCACACa- -3'
miRNA:   3'- cUAC-GGUGUGCCGCA----CGUGGUGUGgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.