miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29193 3' -57.9 NC_006150.1 + 1001 0.71 0.624867
Target:  5'- --cGCUAgGCGGCGcagcgaGCGCCACACgCGg -3'
miRNA:   3'- cuaCGGUgUGCCGCa-----CGUGGUGUG-GC- -5'
29193 3' -57.9 NC_006150.1 + 1161 0.7 0.722784
Target:  5'- cAUGUCACAcacuccCGGCGccUGCGCCaACACCu -3'
miRNA:   3'- cUACGGUGU------GCCGC--ACGUGG-UGUGGc -5'
29193 3' -57.9 NC_006150.1 + 1789 0.69 0.778553
Target:  5'- uGGUGCCuCugGGgaGUGCACgCACACa- -3'
miRNA:   3'- -CUACGGuGugCCg-CACGUG-GUGUGgc -5'
29193 3' -57.9 NC_006150.1 + 21832 0.68 0.813394
Target:  5'- uAUGuUUACACGGCGUuaccGUACCACACa- -3'
miRNA:   3'- cUAC-GGUGUGCCGCA----CGUGGUGUGgc -5'
29193 3' -57.9 NC_006150.1 + 36807 0.68 0.813394
Target:  5'- -cUGUUACGCGGCGUGcCGCUuagAC-CCGa -3'
miRNA:   3'- cuACGGUGUGCCGCAC-GUGG---UGuGGC- -5'
29193 3' -57.9 NC_006150.1 + 40127 0.68 0.821739
Target:  5'- cGUGCgACAU-GCGaaaacGCACCGCACCGc -3'
miRNA:   3'- cUACGgUGUGcCGCa----CGUGGUGUGGC- -5'
29193 3' -57.9 NC_006150.1 + 49606 0.66 0.907561
Target:  5'- uGAUGgCAUAUGGC-UGCAUCGCAgUGc -3'
miRNA:   3'- -CUACgGUGUGCCGcACGUGGUGUgGC- -5'
29193 3' -57.9 NC_006150.1 + 62457 0.68 0.787467
Target:  5'- -uUGCCGCucaucugaaGCGGacuGUGUuCCACGCCGg -3'
miRNA:   3'- cuACGGUG---------UGCCg--CACGuGGUGUGGC- -5'
29193 3' -57.9 NC_006150.1 + 65809 0.68 0.813394
Target:  5'- --gGCCAcCACGGCagagcgaGCGCUGCACCa -3'
miRNA:   3'- cuaCGGU-GUGCCGca-----CGUGGUGUGGc -5'
29193 3' -57.9 NC_006150.1 + 69478 0.69 0.751108
Target:  5'- --cGCaCACGCGGCGUugagGC-CCaACACCGc -3'
miRNA:   3'- cuaCG-GUGUGCCGCA----CGuGG-UGUGGC- -5'
29193 3' -57.9 NC_006150.1 + 69660 0.68 0.829924
Target:  5'- -cUGCUcgGCGCGGaCGUGCgACUcCACCGu -3'
miRNA:   3'- cuACGG--UGUGCC-GCACG-UGGuGUGGC- -5'
29193 3' -57.9 NC_006150.1 + 70018 0.68 0.829924
Target:  5'- -uUGCCGCAaggcacgggucCGGCGUgacgGCGCaGCGCCGc -3'
miRNA:   3'- cuACGGUGU-----------GCCGCA----CGUGgUGUGGC- -5'
29193 3' -57.9 NC_006150.1 + 70287 0.66 0.895287
Target:  5'- --cGCUcgugGCGGCGcUGCGCCgucACGCCGg -3'
miRNA:   3'- cuaCGGug--UGCCGC-ACGUGG---UGUGGC- -5'
29193 3' -57.9 NC_006150.1 + 70786 0.66 0.881476
Target:  5'- --cGCCA-GCGaGCGcaccccuUGCGCCGCACUGa -3'
miRNA:   3'- cuaCGGUgUGC-CGC-------ACGUGGUGUGGC- -5'
29193 3' -57.9 NC_006150.1 + 71209 0.67 0.845781
Target:  5'- --aGCCGCaaGCGGC-UGCACU-CGCCGc -3'
miRNA:   3'- cuaCGGUG--UGCCGcACGUGGuGUGGC- -5'
29193 3' -57.9 NC_006150.1 + 74905 0.66 0.888826
Target:  5'- cGUGCgcgaGCACGGgGUGCcgauUCAUGCCGa -3'
miRNA:   3'- cUACGg---UGUGCCgCACGu---GGUGUGGC- -5'
29193 3' -57.9 NC_006150.1 + 83531 0.68 0.787467
Target:  5'- --gGCgGC-CGGCGU-CAUCGCACCGu -3'
miRNA:   3'- cuaCGgUGuGCCGCAcGUGGUGUGGC- -5'
29193 3' -57.9 NC_006150.1 + 84639 0.67 0.860914
Target:  5'- aGUGCCAguuCGaGCGUGgACCGCACg- -3'
miRNA:   3'- cUACGGUgu-GC-CGCACgUGGUGUGgc -5'
29193 3' -57.9 NC_006150.1 + 92416 0.67 0.860176
Target:  5'- -cUGCUGCgguugaugaugguGCGGCGUGCACgC-CGCCu -3'
miRNA:   3'- cuACGGUG-------------UGCCGCACGUG-GuGUGGc -5'
29193 3' -57.9 NC_006150.1 + 92681 0.71 0.624867
Target:  5'- aGGUaCgAgGCGGCGUGCacGCCGCACCa -3'
miRNA:   3'- -CUAcGgUgUGCCGCACG--UGGUGUGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.