miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29193 3' -57.9 NC_006150.1 + 138363 0.75 0.418802
Target:  5'- cGAUGCCGCaACGGUGUuucaACCGCAUCGa -3'
miRNA:   3'- -CUACGGUG-UGCCGCAcg--UGGUGUGGC- -5'
29193 3' -57.9 NC_006150.1 + 40127 0.68 0.821739
Target:  5'- cGUGCgACAU-GCGaaaacGCACCGCACCGc -3'
miRNA:   3'- cUACGgUGUGcCGCa----CGUGGUGUGGC- -5'
29193 3' -57.9 NC_006150.1 + 70018 0.68 0.829924
Target:  5'- -uUGCCGCAaggcacgggucCGGCGUgacgGCGCaGCGCCGc -3'
miRNA:   3'- cuACGGUGU-----------GCCGCA----CGUGgUGUGGC- -5'
29193 3' -57.9 NC_006150.1 + 92416 0.67 0.860176
Target:  5'- -cUGCUGCgguugaugaugguGCGGCGUGCACgC-CGCCu -3'
miRNA:   3'- cuACGGUG-------------UGCCGCACGUG-GuGUGGc -5'
29193 3' -57.9 NC_006150.1 + 135662 0.67 0.860914
Target:  5'- ---uCCGCGCGGCGaaacUGCACUACuCCu -3'
miRNA:   3'- cuacGGUGUGCCGC----ACGUGGUGuGGc -5'
29193 3' -57.9 NC_006150.1 + 70786 0.66 0.881476
Target:  5'- --cGCCA-GCGaGCGcaccccuUGCGCCGCACUGa -3'
miRNA:   3'- cuaCGGUgUGC-CGC-------ACGUGGUGUGGC- -5'
29193 3' -57.9 NC_006150.1 + 120582 0.66 0.882155
Target:  5'- --aGCUACAacggcCGGCGUGacgACC-CACCGa -3'
miRNA:   3'- cuaCGGUGU-----GCCGCACg--UGGuGUGGC- -5'
29193 3' -57.9 NC_006150.1 + 204947 0.66 0.901532
Target:  5'- --aGCUGgAUGGCGUaCACCGCuCCGa -3'
miRNA:   3'- cuaCGGUgUGCCGCAcGUGGUGuGGC- -5'
29193 3' -57.9 NC_006150.1 + 141133 0.66 0.907561
Target:  5'- ---aCCGCgaGCGGCGUGUGCCcuGCAUCa -3'
miRNA:   3'- cuacGGUG--UGCCGCACGUGG--UGUGGc -5'
29193 3' -57.9 NC_006150.1 + 131862 0.68 0.813394
Target:  5'- --cGCCugACGGCuUGCuCCgACGCCu -3'
miRNA:   3'- cuaCGGugUGCCGcACGuGG-UGUGGc -5'
29193 3' -57.9 NC_006150.1 + 93027 0.68 0.813394
Target:  5'- --gGCCACACGcGCGU-CACUACuaGCCu -3'
miRNA:   3'- cuaCGGUGUGC-CGCAcGUGGUG--UGGc -5'
29193 3' -57.9 NC_006150.1 + 65809 0.68 0.813394
Target:  5'- --gGCCAcCACGGCagagcgaGCGCUGCACCa -3'
miRNA:   3'- cuaCGGU-GUGCCGca-----CGUGGUGUGGc -5'
29193 3' -57.9 NC_006150.1 + 147795 0.72 0.595252
Target:  5'- cGGUGCCugGaCGGUGaggGCACCACgACUGc -3'
miRNA:   3'- -CUACGGugU-GCCGCa--CGUGGUG-UGGC- -5'
29193 3' -57.9 NC_006150.1 + 124971 0.7 0.684037
Target:  5'- --aGCCACGCGGCu--CGCUAUGCCGa -3'
miRNA:   3'- cuaCGGUGUGCCGcacGUGGUGUGGC- -5'
29193 3' -57.9 NC_006150.1 + 181197 0.7 0.693804
Target:  5'- cGGUGgCGCgaagcgaguuuGCGGCGUGCACCcgugcCACUGa -3'
miRNA:   3'- -CUACgGUG-----------UGCCGCACGUGGu----GUGGC- -5'
29193 3' -57.9 NC_006150.1 + 198991 0.7 0.703523
Target:  5'- gGGUGCUAUuuuUGGCGUGCuCCAC-CCa -3'
miRNA:   3'- -CUACGGUGu--GCCGCACGuGGUGuGGc -5'
29193 3' -57.9 NC_006150.1 + 1161 0.7 0.722784
Target:  5'- cAUGUCACAcacuccCGGCGccUGCGCCaACACCu -3'
miRNA:   3'- cUACGGUGU------GCCGC--ACGUGG-UGUGGc -5'
29193 3' -57.9 NC_006150.1 + 69478 0.69 0.751108
Target:  5'- --cGCaCACGCGGCGUugagGC-CCaACACCGc -3'
miRNA:   3'- cuaCG-GUGUGCCGCA----CGuGG-UGUGGC- -5'
29193 3' -57.9 NC_006150.1 + 1789 0.69 0.778553
Target:  5'- uGGUGCCuCugGGgaGUGCACgCACACa- -3'
miRNA:   3'- -CUACGGuGugCCg-CACGUG-GUGUGgc -5'
29193 3' -57.9 NC_006150.1 + 21832 0.68 0.813394
Target:  5'- uAUGuUUACACGGCGUuaccGUACCACACa- -3'
miRNA:   3'- cUAC-GGUGUGCCGCA----CGUGGUGUGgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.