miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29195 5' -52 NC_006150.1 + 111674 1.12 0.006923
Target:  5'- gCGCAGCAAACAUCGCGUCACCAAGGCc -3'
miRNA:   3'- -GCGUCGUUUGUAGCGCAGUGGUUCCG- -5'
29195 5' -52 NC_006150.1 + 85315 0.81 0.45444
Target:  5'- aCGCcGCGGAcCAUCGCGagcUCAUCAAGGCg -3'
miRNA:   3'- -GCGuCGUUU-GUAGCGC---AGUGGUUCCG- -5'
29195 5' -52 NC_006150.1 + 135887 0.78 0.601969
Target:  5'- gGCAGCGGAUcugcgaGUCGUG-CAUCGAGGCg -3'
miRNA:   3'- gCGUCGUUUG------UAGCGCaGUGGUUCCG- -5'
29195 5' -52 NC_006150.1 + 107374 0.75 0.734057
Target:  5'- cCGCcuCAAACAUCGuCGUCGCCAccgucGGCu -3'
miRNA:   3'- -GCGucGUUUGUAGC-GCAGUGGUu----CCG- -5'
29195 5' -52 NC_006150.1 + 75847 0.75 0.763125
Target:  5'- aGCGGCGAGCGguUCGCGagACCAugAGGa -3'
miRNA:   3'- gCGUCGUUUGU--AGCGCagUGGU--UCCg -5'
29195 5' -52 NC_006150.1 + 57172 0.73 0.851063
Target:  5'- uGCAGguG-CuUCGCacccugGUCACCGAGGCg -3'
miRNA:   3'- gCGUCguUuGuAGCG------CAGUGGUUCCG- -5'
29195 5' -52 NC_006150.1 + 992 0.73 0.858883
Target:  5'- gCGCAGCGAGCGccacaCGCGg-GCCGGGGg -3'
miRNA:   3'- -GCGUCGUUUGUa----GCGCagUGGUUCCg -5'
29195 5' -52 NC_006150.1 + 202491 0.73 0.866496
Target:  5'- aGCAGCGAGaugaGCGUC-CCGAGGa -3'
miRNA:   3'- gCGUCGUUUguagCGCAGuGGUUCCg -5'
29195 5' -52 NC_006150.1 + 101421 0.72 0.897399
Target:  5'- aCGCAGCGGAUuccaGacuguguggugcucuUUGUGUCACCAgAGGCu -3'
miRNA:   3'- -GCGUCGUUUG----U---------------AGCGCAGUGGU-UCCG- -5'
29195 5' -52 NC_006150.1 + 129999 0.72 0.901272
Target:  5'- aCGgAGCucGGCAUCGCGUCACCu---- -3'
miRNA:   3'- -GCgUCGu-UUGUAGCGCAGUGGuuccg -5'
29195 5' -52 NC_006150.1 + 80608 0.71 0.913568
Target:  5'- aGUGGCcucuAAUuUUGCGUCACgAAGGCa -3'
miRNA:   3'- gCGUCGu---UUGuAGCGCAGUGgUUCCG- -5'
29195 5' -52 NC_006150.1 + 68004 0.71 0.919358
Target:  5'- aCGUAGCAGACAUCcuagGCGgcaACCGAuuacuguuGGCa -3'
miRNA:   3'- -GCGUCGUUUGUAG----CGCag-UGGUU--------CCG- -5'
29195 5' -52 NC_006150.1 + 88591 0.71 0.929697
Target:  5'- uCGCAGguGgggGCGUCGCGagGCCcagcuggggugcaGGGGCg -3'
miRNA:   3'- -GCGUCguU---UGUAGCGCagUGG-------------UUCCG- -5'
29195 5' -52 NC_006150.1 + 207275 0.71 0.930217
Target:  5'- aCGCAGCGGuauGCAUugacCGCGauaacgCGCCAuGGCa -3'
miRNA:   3'- -GCGUCGUU---UGUA----GCGCa-----GUGGUuCCG- -5'
29195 5' -52 NC_006150.1 + 160646 0.71 0.930217
Target:  5'- -aUAGCAAGCA-C-CGUCACCAauagGGGCg -3'
miRNA:   3'- gcGUCGUUUGUaGcGCAGUGGU----UCCG- -5'
29195 5' -52 NC_006150.1 + 82610 0.7 0.940114
Target:  5'- gGCAGUAGACcacaGUCGuCGUCA--AAGGCa -3'
miRNA:   3'- gCGUCGUUUG----UAGC-GCAGUggUUCCG- -5'
29195 5' -52 NC_006150.1 + 187713 0.7 0.940114
Target:  5'- aGCAGCAAuaaaguuCAUCGUGUCu--GGGGCc -3'
miRNA:   3'- gCGUCGUUu------GUAGCGCAGuggUUCCG- -5'
29195 5' -52 NC_006150.1 + 68449 0.7 0.944703
Target:  5'- cCGCAGCAccgcuAGCG--GCGUCAgCAgAGGCa -3'
miRNA:   3'- -GCGUCGU-----UUGUagCGCAGUgGU-UCCG- -5'
29195 5' -52 NC_006150.1 + 101973 0.7 0.957064
Target:  5'- aCGUAcuGCGAAgaccuggaaaGUCGCGUguCCGAGGCg -3'
miRNA:   3'- -GCGU--CGUUUg---------UAGCGCAguGGUUCCG- -5'
29195 5' -52 NC_006150.1 + 93018 0.69 0.960727
Target:  5'- aGUAGCAAgggccACAcgCGCGUCACUacuagccucugGAGGUc -3'
miRNA:   3'- gCGUCGUU-----UGUa-GCGCAGUGG-----------UUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.