Results 1 - 20 of 72 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29195 | 5' | -52 | NC_006150.1 | + | 107267 | 0.68 | 0.980477 |
Target: 5'- uGCGGCAGAU--UGCGcCGCCGgcgcuucucGGGCc -3' miRNA: 3'- gCGUCGUUUGuaGCGCaGUGGU---------UCCG- -5' |
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29195 | 5' | -52 | NC_006150.1 | + | 88791 | 0.69 | 0.962129 |
Target: 5'- gGCGGCcGAUGUCGcCGUCGCauagccggcggcugGAGGCg -3' miRNA: 3'- gCGUCGuUUGUAGC-GCAGUGg-------------UUCCG- -5' |
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29195 | 5' | -52 | NC_006150.1 | + | 13210 | 0.69 | 0.967391 |
Target: 5'- aCGCAGaaAAACgAUCGCGUC-CCAAacGGUa -3' miRNA: 3'- -GCGUCg-UUUG-UAGCGCAGuGGUU--CCG- -5' |
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29195 | 5' | -52 | NC_006150.1 | + | 133103 | 0.69 | 0.970404 |
Target: 5'- uGCAGCAugcuGACGcCGCGUCggugGCCAAGu- -3' miRNA: 3'- gCGUCGU----UUGUaGCGCAG----UGGUUCcg -5' |
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29195 | 5' | -52 | NC_006150.1 | + | 137836 | 0.69 | 0.970404 |
Target: 5'- gCGCGGCAGGCGgcggaaCGCGUgauUGCCGaaGGGUc -3' miRNA: 3'- -GCGUCGUUUGUa-----GCGCA---GUGGU--UCCG- -5' |
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29195 | 5' | -52 | NC_006150.1 | + | 165097 | 0.69 | 0.970404 |
Target: 5'- aCGCAGCuucgcuacgGAACAguaGCGaUCACCGuGGUg -3' miRNA: 3'- -GCGUCG---------UUUGUag-CGC-AGUGGUuCCG- -5' |
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29195 | 5' | -52 | NC_006150.1 | + | 468 | 0.69 | 0.970404 |
Target: 5'- uCGCGGCGgggggcgucaaAACA-CGCGccgucUCugCGGGGCa -3' miRNA: 3'- -GCGUCGU-----------UUGUaGCGC-----AGugGUUCCG- -5' |
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29195 | 5' | -52 | NC_006150.1 | + | 149961 | 0.69 | 0.973212 |
Target: 5'- uGCAGCGAggGCggCGCGaCcuGCCcGGGCa -3' miRNA: 3'- gCGUCGUU--UGuaGCGCaG--UGGuUCCG- -5' |
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29195 | 5' | -52 | NC_006150.1 | + | 266 | 0.68 | 0.97506 |
Target: 5'- cCGCGGCcccGGCgacccccuuccccaGUCGcCGUCguGCCGAGGCc -3' miRNA: 3'- -GCGUCGu--UUG--------------UAGC-GCAG--UGGUUCCG- -5' |
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29195 | 5' | -52 | NC_006150.1 | + | 93018 | 0.69 | 0.960727 |
Target: 5'- aGUAGCAAgggccACAcgCGCGUCACUacuagccucugGAGGUc -3' miRNA: 3'- gCGUCGUU-----UGUa-GCGCAGUGG-----------UUCCG- -5' |
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29195 | 5' | -52 | NC_006150.1 | + | 101973 | 0.7 | 0.957064 |
Target: 5'- aCGUAcuGCGAAgaccuggaaaGUCGCGUguCCGAGGCg -3' miRNA: 3'- -GCGU--CGUUUg---------UAGCGCAguGGUUCCG- -5' |
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29195 | 5' | -52 | NC_006150.1 | + | 68449 | 0.7 | 0.944703 |
Target: 5'- cCGCAGCAccgcuAGCG--GCGUCAgCAgAGGCa -3' miRNA: 3'- -GCGUCGU-----UUGUagCGCAGUgGU-UCCG- -5' |
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29195 | 5' | -52 | NC_006150.1 | + | 107374 | 0.75 | 0.734057 |
Target: 5'- cCGCcuCAAACAUCGuCGUCGCCAccgucGGCu -3' miRNA: 3'- -GCGucGUUUGUAGC-GCAGUGGUu----CCG- -5' |
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29195 | 5' | -52 | NC_006150.1 | + | 101421 | 0.72 | 0.897399 |
Target: 5'- aCGCAGCGGAUuccaGacuguguggugcucuUUGUGUCACCAgAGGCu -3' miRNA: 3'- -GCGUCGUUUG----U---------------AGCGCAGUGGU-UCCG- -5' |
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29195 | 5' | -52 | NC_006150.1 | + | 129999 | 0.72 | 0.901272 |
Target: 5'- aCGgAGCucGGCAUCGCGUCACCu---- -3' miRNA: 3'- -GCgUCGu-UUGUAGCGCAGUGGuuccg -5' |
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29195 | 5' | -52 | NC_006150.1 | + | 68004 | 0.71 | 0.919358 |
Target: 5'- aCGUAGCAGACAUCcuagGCGgcaACCGAuuacuguuGGCa -3' miRNA: 3'- -GCGUCGUUUGUAG----CGCag-UGGUU--------CCG- -5' |
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29195 | 5' | -52 | NC_006150.1 | + | 160646 | 0.71 | 0.930217 |
Target: 5'- -aUAGCAAGCA-C-CGUCACCAauagGGGCg -3' miRNA: 3'- gcGUCGUUUGUaGcGCAGUGGU----UCCG- -5' |
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29195 | 5' | -52 | NC_006150.1 | + | 207275 | 0.71 | 0.930217 |
Target: 5'- aCGCAGCGGuauGCAUugacCGCGauaacgCGCCAuGGCa -3' miRNA: 3'- -GCGUCGUU---UGUA----GCGCa-----GUGGUuCCG- -5' |
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29195 | 5' | -52 | NC_006150.1 | + | 187713 | 0.7 | 0.940114 |
Target: 5'- aGCAGCAAuaaaguuCAUCGUGUCu--GGGGCc -3' miRNA: 3'- gCGUCGUUu------GUAGCGCAGuggUUCCG- -5' |
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29195 | 5' | -52 | NC_006150.1 | + | 82610 | 0.7 | 0.940114 |
Target: 5'- gGCAGUAGACcacaGUCGuCGUCA--AAGGCa -3' miRNA: 3'- gCGUCGUUUG----UAGC-GCAGUggUUCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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