miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29195 5' -52 NC_006150.1 + 173 0.66 0.993661
Target:  5'- aGCAGCAgGGCcgCaGUGaCACCGcGGCa -3'
miRNA:   3'- gCGUCGU-UUGuaG-CGCaGUGGUuCCG- -5'
29195 5' -52 NC_006150.1 + 266 0.68 0.97506
Target:  5'- cCGCGGCcccGGCgacccccuuccccaGUCGcCGUCguGCCGAGGCc -3'
miRNA:   3'- -GCGUCGu--UUG--------------UAGC-GCAG--UGGUUCCG- -5'
29195 5' -52 NC_006150.1 + 468 0.69 0.970404
Target:  5'- uCGCGGCGgggggcgucaaAACA-CGCGccgucUCugCGGGGCa -3'
miRNA:   3'- -GCGUCGU-----------UUGUaGCGC-----AGugGUUCCG- -5'
29195 5' -52 NC_006150.1 + 992 0.73 0.858883
Target:  5'- gCGCAGCGAGCGccacaCGCGg-GCCGGGGg -3'
miRNA:   3'- -GCGUCGUUUGUa----GCGCagUGGUUCCg -5'
29195 5' -52 NC_006150.1 + 1915 0.68 0.980477
Target:  5'- gCGgAGCGcuuCGUCGgccUGUCGCCGAGGg -3'
miRNA:   3'- -GCgUCGUuu-GUAGC---GCAGUGGUUCCg -5'
29195 5' -52 NC_006150.1 + 3043 0.66 0.995927
Target:  5'- aCGCAGCAGugGagCGC-UCAgCAgcaggaggAGGCa -3'
miRNA:   3'- -GCGUCGUUugUa-GCGcAGUgGU--------UCCG- -5'
29195 5' -52 NC_006150.1 + 3108 0.67 0.98616
Target:  5'- aGCAGC---CAgUGCGUCGCCGAGa- -3'
miRNA:   3'- gCGUCGuuuGUaGCGCAGUGGUUCcg -5'
29195 5' -52 NC_006150.1 + 3185 0.68 0.984428
Target:  5'- -cCAGCAAuuCAUCGCGUucCACagcgcuggaaCAAGGCa -3'
miRNA:   3'- gcGUCGUUu-GUAGCGCA--GUG----------GUUCCG- -5'
29195 5' -52 NC_006150.1 + 10233 0.66 0.99526
Target:  5'- uGcCAGCGAugacaacgaucGCAUgGCGggcaCACCGAGGa -3'
miRNA:   3'- gC-GUCGUU-----------UGUAgCGCa---GUGGUUCCg -5'
29195 5' -52 NC_006150.1 + 13210 0.69 0.967391
Target:  5'- aCGCAGaaAAACgAUCGCGUC-CCAAacGGUa -3'
miRNA:   3'- -GCGUCg-UUUG-UAGCGCAGuGGUU--CCG- -5'
29195 5' -52 NC_006150.1 + 31617 0.67 0.989177
Target:  5'- uGuCGGC-AGCAUC-UG-CACCAAGGCu -3'
miRNA:   3'- gC-GUCGuUUGUAGcGCaGUGGUUCCG- -5'
29195 5' -52 NC_006150.1 + 32697 0.67 0.990479
Target:  5'- aGCgugGGCAAcaGCGUCGC-UCGCaCGAGGg -3'
miRNA:   3'- gCG---UCGUU--UGUAGCGcAGUG-GUUCCg -5'
29195 5' -52 NC_006150.1 + 36039 0.68 0.984428
Target:  5'- aGCAaaGUGAGC-UCgGCGUCcuccaGCCGAGGCu -3'
miRNA:   3'- gCGU--CGUUUGuAG-CGCAG-----UGGUUCCG- -5'
29195 5' -52 NC_006150.1 + 36188 0.66 0.992712
Target:  5'- uGCAGCAGA----GUGUgGCCAGGGa -3'
miRNA:   3'- gCGUCGUUUguagCGCAgUGGUUCCg -5'
29195 5' -52 NC_006150.1 + 41369 0.67 0.989177
Target:  5'- gCGUAGCGAAUGUCGaucuccacCGUCuGCCGAGcGUu -3'
miRNA:   3'- -GCGUCGUUUGUAGC--------GCAG-UGGUUC-CG- -5'
29195 5' -52 NC_006150.1 + 55215 0.67 0.98774
Target:  5'- aGCAGaGGGCGguggCG-GUCACCAauucAGGCg -3'
miRNA:   3'- gCGUCgUUUGUa---GCgCAGUGGU----UCCG- -5'
29195 5' -52 NC_006150.1 + 57172 0.73 0.851063
Target:  5'- uGCAGguG-CuUCGCacccugGUCACCGAGGCg -3'
miRNA:   3'- gCGUCguUuGuAGCG------CAGUGGUUCCG- -5'
29195 5' -52 NC_006150.1 + 59385 0.66 0.992712
Target:  5'- gGCAGUAAaguucuGCAUCGuCGccugcgCACCAuuGGCu -3'
miRNA:   3'- gCGUCGUU------UGUAGC-GCa-----GUGGUu-CCG- -5'
29195 5' -52 NC_006150.1 + 68004 0.71 0.919358
Target:  5'- aCGUAGCAGACAUCcuagGCGgcaACCGAuuacuguuGGCa -3'
miRNA:   3'- -GCGUCGUUUGUAG----CGCag-UGGUU--------CCG- -5'
29195 5' -52 NC_006150.1 + 68219 0.67 0.989844
Target:  5'- gCGCAGCAcaccggaacgccgAACAcccaggauccuaaCGCGUaauCCAGGGCg -3'
miRNA:   3'- -GCGUCGU-------------UUGUa------------GCGCAgu-GGUUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.