Results 1 - 20 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29199 | 5' | -60.9 | NC_006150.1 | + | 105222 | 0.66 | 0.756562 |
Target: 5'- uGCCCGUACaGUGugCCCaGAGAGa-- -3' miRNA: 3'- -CGGGCGUGgCGCugGGGcUUCUCguu -5' |
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29199 | 5' | -60.9 | NC_006150.1 | + | 71892 | 0.66 | 0.791176 |
Target: 5'- cGCCCGCGCCGagcgaaaCGACgCCauaGAuAGAGUg- -3' miRNA: 3'- -CGGGCGUGGC-------GCUG-GGg--CU-UCUCGuu -5' |
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29199 | 5' | -60.9 | NC_006150.1 | + | 87914 | 0.66 | 0.747425 |
Target: 5'- cCCCGCccACCGgGGCCUCGcagccucgguggGGGGGCGGa -3' miRNA: 3'- cGGGCG--UGGCgCUGGGGC------------UUCUCGUU- -5' |
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29199 | 5' | -60.9 | NC_006150.1 | + | 216487 | 0.66 | 0.747425 |
Target: 5'- aGCCCGCACCGaGACCgCUGu---GCGu -3' miRNA: 3'- -CGGGCGUGGCgCUGG-GGCuucuCGUu -5' |
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29199 | 5' | -60.9 | NC_006150.1 | + | 82223 | 0.66 | 0.747425 |
Target: 5'- --aCGUAUaCGCGAuccuguCCCCGGAGAGCGGg -3' miRNA: 3'- cggGCGUG-GCGCU------GGGGCUUCUCGUU- -5' |
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29199 | 5' | -60.9 | NC_006150.1 | + | 104230 | 0.66 | 0.791176 |
Target: 5'- cGCCCGUuaagaaaagccGCCauGCGAUCCaggaucauaaacaUGAAGAGCAGc -3' miRNA: 3'- -CGGGCG-----------UGG--CGCUGGG-------------GCUUCUCGUU- -5' |
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29199 | 5' | -60.9 | NC_006150.1 | + | 150051 | 0.66 | 0.79204 |
Target: 5'- gGCUCGCACCGCcACUUgGGcuGGCAAg -3' miRNA: 3'- -CGGGCGUGGCGcUGGGgCUucUCGUU- -5' |
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29199 | 5' | -60.9 | NC_006150.1 | + | 130691 | 0.67 | 0.728885 |
Target: 5'- gGCUCGuCGCUGCGACguuuuggaacgUCUGAGGGGCGc -3' miRNA: 3'- -CGGGC-GUGGCGCUG-----------GGGCUUCUCGUu -5' |
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29199 | 5' | -60.9 | NC_006150.1 | + | 216389 | 0.67 | 0.719497 |
Target: 5'- uGCCgaGCACCGCaGCCgccaCGgcGAGCAAc -3' miRNA: 3'- -CGGg-CGUGGCGcUGGg---GCuuCUCGUU- -5' |
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29199 | 5' | -60.9 | NC_006150.1 | + | 88184 | 0.67 | 0.737269 |
Target: 5'- gGCCgCGCGCCcccgcccuucuggGCGGCCCUcuGGGGGCGu -3' miRNA: 3'- -CGG-GCGUGG-------------CGCUGGGGc-UUCUCGUu -5' |
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29199 | 5' | -60.9 | NC_006150.1 | + | 207504 | 0.67 | 0.700529 |
Target: 5'- -aCCGCugCGU-ACCCCaGGAGAGUGAc -3' miRNA: 3'- cgGGCGugGCGcUGGGG-CUUCUCGUU- -5' |
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29199 | 5' | -60.9 | NC_006150.1 | + | 199439 | 0.67 | 0.710043 |
Target: 5'- aGUCCGCGCCGUGGCacaCGAAGcuCAc -3' miRNA: 3'- -CGGGCGUGGCGCUGgg-GCUUCucGUu -5' |
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29199 | 5' | -60.9 | NC_006150.1 | + | 88083 | 0.67 | 0.700529 |
Target: 5'- uGCCCggacgGCGCCGCGgacugcGCCaCCGAGcuccGGGCAGg -3' miRNA: 3'- -CGGG-----CGUGGCGC------UGG-GGCUU----CUCGUU- -5' |
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29199 | 5' | -60.9 | NC_006150.1 | + | 88173 | 0.68 | 0.652332 |
Target: 5'- cGCCCcccCACCGaggcugcgaGGCCCCGguGGGCGGg -3' miRNA: 3'- -CGGGc--GUGGCg--------CUGGGGCuuCUCGUU- -5' |
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29199 | 5' | -60.9 | NC_006150.1 | + | 24840 | 0.68 | 0.662029 |
Target: 5'- uUCCGCAUCcacACCCCGGAGAGCc- -3' miRNA: 3'- cGGGCGUGGcgcUGGGGCUUCUCGuu -5' |
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29199 | 5' | -60.9 | NC_006150.1 | + | 207898 | 0.68 | 0.662029 |
Target: 5'- uGUCCGCcuaACgGCgGGCCCCGAGGcGUAAc -3' miRNA: 3'- -CGGGCG---UGgCG-CUGGGGCUUCuCGUU- -5' |
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29199 | 5' | -60.9 | NC_006150.1 | + | 182098 | 0.68 | 0.662029 |
Target: 5'- uGCCCGC-CUGUGcucauaaacuucGCUCCGgcGAGCAu -3' miRNA: 3'- -CGGGCGuGGCGC------------UGGGGCuuCUCGUu -5' |
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29199 | 5' | -60.9 | NC_006150.1 | + | 8633 | 0.69 | 0.574799 |
Target: 5'- -gCCGUugCGCG-CCuuGAGGAGCu- -3' miRNA: 3'- cgGGCGugGCGCuGGggCUUCUCGuu -5' |
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29199 | 5' | -60.9 | NC_006150.1 | + | 132709 | 0.69 | 0.603764 |
Target: 5'- aGCUCGUccugggccagaGCCGCGACCgCGGAGA-CAAa -3' miRNA: 3'- -CGGGCG-----------UGGCGCUGGgGCUUCUcGUU- -5' |
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29199 | 5' | -60.9 | NC_006150.1 | + | 2222 | 0.69 | 0.613466 |
Target: 5'- gGCgaGgGCCGUGGCCgCCGAGGAGgAAg -3' miRNA: 3'- -CGggCgUGGCGCUGG-GGCUUCUCgUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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