miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29199 5' -60.9 NC_006150.1 + 114281 1.08 0.001859
Target:  5'- aGCCCGCACCGCGACCCCGAAGAGCAAg -3'
miRNA:   3'- -CGGGCGUGGCGCUGGGGCUUCUCGUU- -5'
29199 5' -60.9 NC_006150.1 + 119565 0.77 0.224005
Target:  5'- -aCCGCGCUGCGGCCCCGcaccugcgagagGAGAGUGAc -3'
miRNA:   3'- cgGGCGUGGCGCUGGGGC------------UUCUCGUU- -5'
29199 5' -60.9 NC_006150.1 + 114896 0.75 0.307286
Target:  5'- uGCUCGCGCacgaGCGGgCCCGAaaAGAGCGGg -3'
miRNA:   3'- -CGGGCGUGg---CGCUgGGGCU--UCUCGUU- -5'
29199 5' -60.9 NC_006150.1 + 90570 0.72 0.415581
Target:  5'- cGCCaucugugguuguugaUGCuGCUGCGcCCCCGAAGGGCAAg -3'
miRNA:   3'- -CGG---------------GCG-UGGCGCuGGGGCUUCUCGUU- -5'
29199 5' -60.9 NC_006150.1 + 106946 0.72 0.428981
Target:  5'- gGUCgCGUGCCGacuGGCCCCGAuGAGCGAg -3'
miRNA:   3'- -CGG-GCGUGGCg--CUGGGGCUuCUCGUU- -5'
29199 5' -60.9 NC_006150.1 + 69566 0.71 0.463561
Target:  5'- uGCUCGCGCUGCcAgUCCGGAGAGUAu -3'
miRNA:   3'- -CGGGCGUGGCGcUgGGGCUUCUCGUu -5'
29199 5' -60.9 NC_006150.1 + 703 0.7 0.517997
Target:  5'- cGCCCccCGCCGCGACCCCc--GGGCc- -3'
miRNA:   3'- -CGGGc-GUGGCGCUGGGGcuuCUCGuu -5'
29199 5' -60.9 NC_006150.1 + 556 0.7 0.536715
Target:  5'- cCCCGCGCCGCGAaaCCCGAGccGCc- -3'
miRNA:   3'- cGGGCGUGGCGCUg-GGGCUUcuCGuu -5'
29199 5' -60.9 NC_006150.1 + 116466 0.7 0.546162
Target:  5'- aCCCGCAa-GUGACCaaaGAAGAGCGAg -3'
miRNA:   3'- cGGGCGUggCGCUGGgg-CUUCUCGUU- -5'
29199 5' -60.9 NC_006150.1 + 29476 0.7 0.555662
Target:  5'- -gCCGU-CUGCGGgCCCGggGAGCGu -3'
miRNA:   3'- cgGGCGuGGCGCUgGGGCuuCUCGUu -5'
29199 5' -60.9 NC_006150.1 + 8633 0.69 0.574799
Target:  5'- -gCCGUugCGCG-CCuuGAGGAGCu- -3'
miRNA:   3'- cgGGCGugGCGCuGGggCUUCUCGuu -5'
29199 5' -60.9 NC_006150.1 + 192192 0.69 0.574799
Target:  5'- gGCUCGCACaUGCGAUgugccucagaagCUCGggGAGCAu -3'
miRNA:   3'- -CGGGCGUG-GCGCUG------------GGGCuuCUCGUu -5'
29199 5' -60.9 NC_006150.1 + 132709 0.69 0.603764
Target:  5'- aGCUCGUccugggccagaGCCGCGACCgCGGAGA-CAAa -3'
miRNA:   3'- -CGGGCG-----------UGGCGCUGGgGCUUCUcGUU- -5'
29199 5' -60.9 NC_006150.1 + 2222 0.69 0.613466
Target:  5'- gGCgaGgGCCGUGGCCgCCGAGGAGgAAg -3'
miRNA:   3'- -CGggCgUGGCGCUGG-GGCUUCUCgUU- -5'
29199 5' -60.9 NC_006150.1 + 221415 0.69 0.62318
Target:  5'- aCCCGCAUucaGCG-CCCUGggGAGgAAa -3'
miRNA:   3'- cGGGCGUGg--CGCuGGGGCuuCUCgUU- -5'
29199 5' -60.9 NC_006150.1 + 88173 0.68 0.652332
Target:  5'- cGCCCcccCACCGaggcugcgaGGCCCCGguGGGCGGg -3'
miRNA:   3'- -CGGGc--GUGGCg--------CUGGGGCuuCUCGUU- -5'
29199 5' -60.9 NC_006150.1 + 182098 0.68 0.662029
Target:  5'- uGCCCGC-CUGUGcucauaaacuucGCUCCGgcGAGCAu -3'
miRNA:   3'- -CGGGCGuGGCGC------------UGGGGCuuCUCGUu -5'
29199 5' -60.9 NC_006150.1 + 207898 0.68 0.662029
Target:  5'- uGUCCGCcuaACgGCgGGCCCCGAGGcGUAAc -3'
miRNA:   3'- -CGGGCG---UGgCG-CUGGGGCUUCuCGUU- -5'
29199 5' -60.9 NC_006150.1 + 24840 0.68 0.662029
Target:  5'- uUCCGCAUCcacACCCCGGAGAGCc- -3'
miRNA:   3'- cGGGCGUGGcgcUGGGGCUUCUCGuu -5'
29199 5' -60.9 NC_006150.1 + 207504 0.67 0.700529
Target:  5'- -aCCGCugCGU-ACCCCaGGAGAGUGAc -3'
miRNA:   3'- cgGGCGugGCGcUGGGG-CUUCUCGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.