Results 1 - 20 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29199 | 5' | -60.9 | NC_006150.1 | + | 119565 | 0.77 | 0.224005 |
Target: 5'- -aCCGCGCUGCGGCCCCGcaccugcgagagGAGAGUGAc -3' miRNA: 3'- cgGGCGUGGCGCUGGGGC------------UUCUCGUU- -5' |
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29199 | 5' | -60.9 | NC_006150.1 | + | 71892 | 0.66 | 0.791176 |
Target: 5'- cGCCCGCGCCGagcgaaaCGACgCCauaGAuAGAGUg- -3' miRNA: 3'- -CGGGCGUGGC-------GCUG-GGg--CU-UCUCGuu -5' |
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29199 | 5' | -60.9 | NC_006150.1 | + | 105222 | 0.66 | 0.756562 |
Target: 5'- uGCCCGUACaGUGugCCCaGAGAGa-- -3' miRNA: 3'- -CGGGCGUGgCGCugGGGcUUCUCguu -5' |
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29199 | 5' | -60.9 | NC_006150.1 | + | 87914 | 0.66 | 0.747425 |
Target: 5'- cCCCGCccACCGgGGCCUCGcagccucgguggGGGGGCGGa -3' miRNA: 3'- cGGGCG--UGGCgCUGGGGC------------UUCUCGUU- -5' |
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29199 | 5' | -60.9 | NC_006150.1 | + | 88184 | 0.67 | 0.737269 |
Target: 5'- gGCCgCGCGCCcccgcccuucuggGCGGCCCUcuGGGGGCGu -3' miRNA: 3'- -CGG-GCGUGG-------------CGCUGGGGc-UUCUCGUu -5' |
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29199 | 5' | -60.9 | NC_006150.1 | + | 216389 | 0.67 | 0.719497 |
Target: 5'- uGCCgaGCACCGCaGCCgccaCGgcGAGCAAc -3' miRNA: 3'- -CGGg-CGUGGCGcUGGg---GCuuCUCGUU- -5' |
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29199 | 5' | -60.9 | NC_006150.1 | + | 207898 | 0.68 | 0.662029 |
Target: 5'- uGUCCGCcuaACgGCgGGCCCCGAGGcGUAAc -3' miRNA: 3'- -CGGGCG---UGgCG-CUGGGGCUUCuCGUU- -5' |
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29199 | 5' | -60.9 | NC_006150.1 | + | 8633 | 0.69 | 0.574799 |
Target: 5'- -gCCGUugCGCG-CCuuGAGGAGCu- -3' miRNA: 3'- cgGGCGugGCGCuGGggCUUCUCGuu -5' |
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29199 | 5' | -60.9 | NC_006150.1 | + | 29476 | 0.7 | 0.555662 |
Target: 5'- -gCCGU-CUGCGGgCCCGggGAGCGu -3' miRNA: 3'- cgGGCGuGGCGCUgGGGCuuCUCGUu -5' |
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29199 | 5' | -60.9 | NC_006150.1 | + | 556 | 0.7 | 0.536715 |
Target: 5'- cCCCGCGCCGCGAaaCCCGAGccGCc- -3' miRNA: 3'- cGGGCGUGGCGCUg-GGGCUUcuCGuu -5' |
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29199 | 5' | -60.9 | NC_006150.1 | + | 90570 | 0.72 | 0.415581 |
Target: 5'- cGCCaucugugguuguugaUGCuGCUGCGcCCCCGAAGGGCAAg -3' miRNA: 3'- -CGG---------------GCG-UGGCGCuGGGGCUUCUCGUU- -5' |
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29199 | 5' | -60.9 | NC_006150.1 | + | 114896 | 0.75 | 0.307286 |
Target: 5'- uGCUCGCGCacgaGCGGgCCCGAaaAGAGCGGg -3' miRNA: 3'- -CGGGCGUGg---CGCUgGGGCU--UCUCGUU- -5' |
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29199 | 5' | -60.9 | NC_006150.1 | + | 2222 | 0.69 | 0.613466 |
Target: 5'- gGCgaGgGCCGUGGCCgCCGAGGAGgAAg -3' miRNA: 3'- -CGggCgUGGCGCUGG-GGCUUCUCgUU- -5' |
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29199 | 5' | -60.9 | NC_006150.1 | + | 132709 | 0.69 | 0.603764 |
Target: 5'- aGCUCGUccugggccagaGCCGCGACCgCGGAGA-CAAa -3' miRNA: 3'- -CGGGCG-----------UGGCGCUGGgGCUUCUcGUU- -5' |
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29199 | 5' | -60.9 | NC_006150.1 | + | 192192 | 0.69 | 0.574799 |
Target: 5'- gGCUCGCACaUGCGAUgugccucagaagCUCGggGAGCAu -3' miRNA: 3'- -CGGGCGUG-GCGCUG------------GGGCuuCUCGUu -5' |
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29199 | 5' | -60.9 | NC_006150.1 | + | 116466 | 0.7 | 0.546162 |
Target: 5'- aCCCGCAa-GUGACCaaaGAAGAGCGAg -3' miRNA: 3'- cGGGCGUggCGCUGGgg-CUUCUCGUU- -5' |
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29199 | 5' | -60.9 | NC_006150.1 | + | 703 | 0.7 | 0.517997 |
Target: 5'- cGCCCccCGCCGCGACCCCc--GGGCc- -3' miRNA: 3'- -CGGGc-GUGGCGCUGGGGcuuCUCGuu -5' |
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29199 | 5' | -60.9 | NC_006150.1 | + | 69566 | 0.71 | 0.463561 |
Target: 5'- uGCUCGCGCUGCcAgUCCGGAGAGUAu -3' miRNA: 3'- -CGGGCGUGGCGcUgGGGCUUCUCGUu -5' |
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29199 | 5' | -60.9 | NC_006150.1 | + | 106946 | 0.72 | 0.428981 |
Target: 5'- gGUCgCGUGCCGacuGGCCCCGAuGAGCGAg -3' miRNA: 3'- -CGG-GCGUGGCg--CUGGGGCUuCUCGUU- -5' |
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29199 | 5' | -60.9 | NC_006150.1 | + | 150051 | 0.66 | 0.79204 |
Target: 5'- gGCUCGCACCGCcACUUgGGcuGGCAAg -3' miRNA: 3'- -CGGGCGUGGCGcUGGGgCUucUCGUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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