miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29210 5' -54.3 NC_006150.1 + 128916 0.66 0.979063
Target:  5'- gGCGC-UAGUGGccUGcGAGGCuguguCUCCg -3'
miRNA:   3'- aCGCGuAUCGCC--ACcUUCCGuu---GAGG- -5'
29210 5' -54.3 NC_006150.1 + 181772 0.66 0.979063
Target:  5'- --aGCAUGGUGGcGcGAGGGCuAGCUgCa -3'
miRNA:   3'- acgCGUAUCGCCaC-CUUCCG-UUGAgG- -5'
29210 5' -54.3 NC_006150.1 + 57707 0.66 0.979063
Target:  5'- gUGCGCAUcuuuGUGGaucugUGGGAcguGGCGGCuaUCCg -3'
miRNA:   3'- -ACGCGUAu---CGCC-----ACCUU---CCGUUG--AGG- -5'
29210 5' -54.3 NC_006150.1 + 205311 0.66 0.97769
Target:  5'- -aCGC-UGGUGGUGGGGgauuagagcuaaucuGGCuACUCCc -3'
miRNA:   3'- acGCGuAUCGCCACCUU---------------CCGuUGAGG- -5'
29210 5' -54.3 NC_006150.1 + 181275 0.66 0.976737
Target:  5'- cGCGgAgGGCGG-GaGAGGCGGCUgCCc -3'
miRNA:   3'- aCGCgUaUCGCCaCcUUCCGUUGA-GG- -5'
29210 5' -54.3 NC_006150.1 + 133389 0.66 0.976737
Target:  5'- gGgGCcuGUGGCGGacgacgccgUGGAaaccgaGGGCGGCUCg -3'
miRNA:   3'- aCgCG--UAUCGCC---------ACCU------UCCGUUGAGg -5'
29210 5' -54.3 NC_006150.1 + 109211 0.66 0.976737
Target:  5'- gGCGCAggauuUGGCaGGUGaggcguucGAAGGUGACggCCg -3'
miRNA:   3'- aCGCGU-----AUCG-CCAC--------CUUCCGUUGa-GG- -5'
29210 5' -54.3 NC_006150.1 + 1869 0.66 0.974227
Target:  5'- gUGUGUcUGGgGGUGGggGGUuGCg-- -3'
miRNA:   3'- -ACGCGuAUCgCCACCuuCCGuUGagg -5'
29210 5' -54.3 NC_006150.1 + 109324 0.66 0.974227
Target:  5'- aUGUGag-AGCuGGUGGGAGGCcgGugUCa -3'
miRNA:   3'- -ACGCguaUCG-CCACCUUCCG--UugAGg -5'
29210 5' -54.3 NC_006150.1 + 39230 0.66 0.974227
Target:  5'- gUGCGCGUuuGUGGUcGgcGGCAuguACUCg -3'
miRNA:   3'- -ACGCGUAu-CGCCAcCuuCCGU---UGAGg -5'
29210 5' -54.3 NC_006150.1 + 96514 0.66 0.974227
Target:  5'- gGCGCAaguacuaGGCGcGUGGAuaaaaGCAGCgUCCa -3'
miRNA:   3'- aCGCGUa------UCGC-CACCUuc---CGUUG-AGG- -5'
29210 5' -54.3 NC_006150.1 + 40126 0.67 0.965523
Target:  5'- gGUGgAUGGUGaugagGGcuuGGGCGACUCCu -3'
miRNA:   3'- aCGCgUAUCGCca---CCu--UCCGUUGAGG- -5'
29210 5' -54.3 NC_006150.1 + 214821 0.67 0.961867
Target:  5'- aGCGUagcgacgacgaugAUGGUGGUGGuggcGGCGauGCUUCa -3'
miRNA:   3'- aCGCG-------------UAUCGCCACCuu--CCGU--UGAGG- -5'
29210 5' -54.3 NC_006150.1 + 88806 0.67 0.958682
Target:  5'- cGuCGCAUagccGGCGGcUGGA-GGCGAC-CUg -3'
miRNA:   3'- aC-GCGUA----UCGCC-ACCUuCCGUUGaGG- -5'
29210 5' -54.3 NC_006150.1 + 139380 0.67 0.956081
Target:  5'- gUGCGC-UGGCGGacgguccgccgccUGGGguacgggagggcaucAGGCGACUUUg -3'
miRNA:   3'- -ACGCGuAUCGCC-------------ACCU---------------UCCGUUGAGG- -5'
29210 5' -54.3 NC_006150.1 + 93151 0.67 0.954934
Target:  5'- cUGCGUuuccgucaAGCGGcUGGAAGGCucacgcaccaaaGACUuCCg -3'
miRNA:   3'- -ACGCGua------UCGCC-ACCUUCCG------------UUGA-GG- -5'
29210 5' -54.3 NC_006150.1 + 220265 0.67 0.954547
Target:  5'- uUGgGCAUGcauacacGCGG-GGGAGGU--CUCCa -3'
miRNA:   3'- -ACgCGUAU-------CGCCaCCUUCCGuuGAGG- -5'
29210 5' -54.3 NC_006150.1 + 115435 0.67 0.946763
Target:  5'- aGCcuGCGUGGUcGUGGAgagaauGGGCAGCgCCu -3'
miRNA:   3'- aCG--CGUAUCGcCACCU------UCCGUUGaGG- -5'
29210 5' -54.3 NC_006150.1 + 130840 0.67 0.946763
Target:  5'- gGCaGCAUagcAGCGGgGGAAGGCGgaguggugcGCUUg -3'
miRNA:   3'- aCG-CGUA---UCGCCaCCUUCCGU---------UGAGg -5'
29210 5' -54.3 NC_006150.1 + 183579 0.68 0.942334
Target:  5'- cUGgGUAggaGGCGGUGGAgggGGGUGGCUa- -3'
miRNA:   3'- -ACgCGUa--UCGCCACCU---UCCGUUGAgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.