miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29216 5' -51.5 NC_006150.1 + 126891 1.1 0.009416
Target:  5'- uCGAGAGGAAAUGGCAAAGCCACCAGGc -3'
miRNA:   3'- -GCUCUCCUUUACCGUUUCGGUGGUCC- -5'
29216 5' -51.5 NC_006150.1 + 101896 0.8 0.535217
Target:  5'- -aGGAGGAAGUGGU--GGCCaACCAGGu -3'
miRNA:   3'- gcUCUCCUUUACCGuuUCGG-UGGUCC- -5'
29216 5' -51.5 NC_006150.1 + 204797 0.78 0.654599
Target:  5'- gGAGuGGAAGcGGCAgagcgcgaagcggcGAGCCAUCAGGa -3'
miRNA:   3'- gCUCuCCUUUaCCGU--------------UUCGGUGGUCC- -5'
29216 5' -51.5 NC_006150.1 + 128908 0.77 0.688363
Target:  5'- gGAGaAGGAGA-GGCGGcAGCCGCCgAGGg -3'
miRNA:   3'- gCUC-UCCUUUaCCGUU-UCGGUGG-UCC- -5'
29216 5' -51.5 NC_006150.1 + 139411 0.77 0.708595
Target:  5'- aCGGGAGGgcAUcaGGCGAcuuuGGuCCACCAGGg -3'
miRNA:   3'- -GCUCUCCuuUA--CCGUU----UC-GGUGGUCC- -5'
29216 5' -51.5 NC_006150.1 + 132676 0.75 0.804325
Target:  5'- aGAGAGGGAGUcGCGAGGCCAgucUCGGa -3'
miRNA:   3'- gCUCUCCUUUAcCGUUUCGGU---GGUCc -5'
29216 5' -51.5 NC_006150.1 + 139373 0.73 0.877375
Target:  5'- aCGGGAGGugcgcUGGCGGAcgguccGCCGCCuGGg -3'
miRNA:   3'- -GCUCUCCuuu--ACCGUUU------CGGUGGuCC- -5'
29216 5' -51.5 NC_006150.1 + 88287 0.73 0.884466
Target:  5'- cCGGGGGGAGggGGUAgcGCCAgCGGa -3'
miRNA:   3'- -GCUCUCCUUuaCCGUuuCGGUgGUCc -5'
29216 5' -51.5 NC_006150.1 + 592 0.73 0.889296
Target:  5'- gGAGGGGGAAgggccgcguguucuUGGCAGAccGCCAaccCCGGGc -3'
miRNA:   3'- gCUCUCCUUU--------------ACCGUUU--CGGU---GGUCC- -5'
29216 5' -51.5 NC_006150.1 + 182835 0.73 0.891331
Target:  5'- gCGGGGGGcugaAAAUGGCAAguGGCCGugAGGg -3'
miRNA:   3'- -GCUCUCC----UUUACCGUU--UCGGUggUCC- -5'
29216 5' -51.5 NC_006150.1 + 1424 0.72 0.916456
Target:  5'- aGGcGAGGAGGuguUGGCGcAGgCGCCGGGa -3'
miRNA:   3'- gCU-CUCCUUU---ACCGUuUCgGUGGUCC- -5'
29216 5' -51.5 NC_006150.1 + 114836 0.71 0.927582
Target:  5'- gCGAGcGGGGcUGGCAGcAGCCACggaAGGa -3'
miRNA:   3'- -GCUCuCCUUuACCGUU-UCGGUGg--UCC- -5'
29216 5' -51.5 NC_006150.1 + 30099 0.71 0.927582
Target:  5'- gGGGAGGgcAU-GCAcuGCCACCAGa -3'
miRNA:   3'- gCUCUCCuuUAcCGUuuCGGUGGUCc -5'
29216 5' -51.5 NC_006150.1 + 128461 0.71 0.937741
Target:  5'- aGAGGuGGcuAGAUGGCGGcuuuGCCACCAuGGa -3'
miRNA:   3'- gCUCU-CC--UUUACCGUUu---CGGUGGU-CC- -5'
29216 5' -51.5 NC_006150.1 + 218390 0.71 0.942459
Target:  5'- gCGGGcGGAGGgcaugcugccUGGUuu-GCCGCCAGGa -3'
miRNA:   3'- -GCUCuCCUUU----------ACCGuuuCGGUGGUCC- -5'
29216 5' -51.5 NC_006150.1 + 160216 0.7 0.950768
Target:  5'- gGGGAGGcugaugauaauauAAAUGuaGCuuGGGCCACCAGGu -3'
miRNA:   3'- gCUCUCC-------------UUUAC--CGu-UUCGGUGGUCC- -5'
29216 5' -51.5 NC_006150.1 + 81413 0.7 0.950768
Target:  5'- aGAGGGGGug-GGCGcGGCCAUucaugggCAGGa -3'
miRNA:   3'- gCUCUCCUuuaCCGUuUCGGUG-------GUCC- -5'
29216 5' -51.5 NC_006150.1 + 134708 0.7 0.951182
Target:  5'- aCGcGGAGGAGAUGGCuuAGucuCCGCUgAGGa -3'
miRNA:   3'- -GC-UCUCCUUUACCGuuUC---GGUGG-UCC- -5'
29216 5' -51.5 NC_006150.1 + 215720 0.7 0.951182
Target:  5'- uGAGGcGGAAUGGgauCGGGGCCAgCAGGa -3'
miRNA:   3'- gCUCUcCUUUACC---GUUUCGGUgGUCC- -5'
29216 5' -51.5 NC_006150.1 + 169721 0.7 0.951182
Target:  5'- gCGcAGAGuacaauGAGUGGCAgcGCCACCAGu -3'
miRNA:   3'- -GC-UCUCc-----UUUACCGUuuCGGUGGUCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.