miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29216 5' -51.5 NC_006150.1 + 592 0.73 0.889296
Target:  5'- gGAGGGGGAAgggccgcguguucuUGGCAGAccGCCAaccCCGGGc -3'
miRNA:   3'- gCUCUCCUUU--------------ACCGUUU--CGGU---GGUCC- -5'
29216 5' -51.5 NC_006150.1 + 1424 0.72 0.916456
Target:  5'- aGGcGAGGAGGuguUGGCGcAGgCGCCGGGa -3'
miRNA:   3'- gCU-CUCCUUU---ACCGUuUCgGUGGUCC- -5'
29216 5' -51.5 NC_006150.1 + 1477 0.67 0.993246
Target:  5'- gCGGGuAGGaAGAUGGUGcAGGCgCGCCAGcGg -3'
miRNA:   3'- -GCUC-UCC-UUUACCGU-UUCG-GUGGUC-C- -5'
29216 5' -51.5 NC_006150.1 + 1775 0.7 0.958973
Target:  5'- gGAGAGGGAggGaGUAGGGUgACgGGGg -3'
miRNA:   3'- gCUCUCCUUuaC-CGUUUCGgUGgUCC- -5'
29216 5' -51.5 NC_006150.1 + 20644 0.66 0.997201
Target:  5'- gGAGAcucaucgcgccaaGGAAAcauuguuUGGCAcAGGCCACCAu- -3'
miRNA:   3'- gCUCU-------------CCUUU-------ACCGU-UUCGGUGGUcc -5'
29216 5' -51.5 NC_006150.1 + 30099 0.71 0.927582
Target:  5'- gGGGAGGgcAU-GCAcuGCCACCAGa -3'
miRNA:   3'- gCUCUCCuuUAcCGUuuCGGUGGUCc -5'
29216 5' -51.5 NC_006150.1 + 74537 0.69 0.971896
Target:  5'- uCGAGGGuGAuGUGGUAAucgucgcgcGCCGCCAGc -3'
miRNA:   3'- -GCUCUC-CUuUACCGUUu--------CGGUGGUCc -5'
29216 5' -51.5 NC_006150.1 + 81413 0.7 0.950768
Target:  5'- aGAGGGGGug-GGCGcGGCCAUucaugggCAGGa -3'
miRNA:   3'- gCUCUCCUuuaCCGUuUCGGUG-------GUCC- -5'
29216 5' -51.5 NC_006150.1 + 83971 0.68 0.985374
Target:  5'- -uAGAGGAAGUGGUggaaAAAGCC-CCGu- -3'
miRNA:   3'- gcUCUCCUUUACCG----UUUCGGuGGUcc -5'
29216 5' -51.5 NC_006150.1 + 88140 0.68 0.983565
Target:  5'- gCGGGGGGGug-GGCGcagugugcAAGCCAcggcuaugcCCAGGu -3'
miRNA:   3'- -GCUCUCCUuuaCCGU--------UUCGGU---------GGUCC- -5'
29216 5' -51.5 NC_006150.1 + 88287 0.73 0.884466
Target:  5'- cCGGGGGGAGggGGUAgcGCCAgCGGa -3'
miRNA:   3'- -GCUCUCCUUuaCCGUuuCGGUgGUCc -5'
29216 5' -51.5 NC_006150.1 + 88358 0.67 0.992247
Target:  5'- uCGAGGGGGAGggGGCGgcGCaugCAGGa -3'
miRNA:   3'- -GCUCUCCUUUa-CCGUuuCGgugGUCC- -5'
29216 5' -51.5 NC_006150.1 + 101896 0.8 0.535217
Target:  5'- -aGGAGGAAGUGGU--GGCCaACCAGGu -3'
miRNA:   3'- gcUCUCCUUUACCGuuUCGG-UGGUCC- -5'
29216 5' -51.5 NC_006150.1 + 101915 0.66 0.997292
Target:  5'- aGAGAGGGcugcGUGGCuu-GCUGCUGGa -3'
miRNA:   3'- gCUCUCCUu---UACCGuuuCGGUGGUCc -5'
29216 5' -51.5 NC_006150.1 + 104541 0.69 0.979222
Target:  5'- gGAGAGGGccGAUgcugagaGGCAAAGUCGgucagaagcaucCCAGGg -3'
miRNA:   3'- gCUCUCCU--UUA-------CCGUUUCGGU------------GGUCC- -5'
29216 5' -51.5 NC_006150.1 + 114836 0.71 0.927582
Target:  5'- gCGAGcGGGGcUGGCAGcAGCCACggaAGGa -3'
miRNA:   3'- -GCUCuCCUUuACCGUU-UCGGUGg--UCC- -5'
29216 5' -51.5 NC_006150.1 + 117339 0.66 0.997292
Target:  5'- uGGGAGGAGAggaGGCc--GUCGCCAa- -3'
miRNA:   3'- gCUCUCCUUUa--CCGuuuCGGUGGUcc -5'
29216 5' -51.5 NC_006150.1 + 121953 0.66 0.997591
Target:  5'- cCGAcGAGGAAuuacccggaccuggGUGGCGugauGCCGCCcuGa -3'
miRNA:   3'- -GCU-CUCCUU--------------UACCGUuu--CGGUGGucC- -5'
29216 5' -51.5 NC_006150.1 + 126891 1.1 0.009416
Target:  5'- uCGAGAGGAAAUGGCAAAGCCACCAGGc -3'
miRNA:   3'- -GCUCUCCUUUACCGUUUCGGUGGUCC- -5'
29216 5' -51.5 NC_006150.1 + 128461 0.71 0.937741
Target:  5'- aGAGGuGGcuAGAUGGCGGcuuuGCCACCAuGGa -3'
miRNA:   3'- gCUCU-CC--UUUACCGUUu---CGGUGGU-CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.