Results 1 - 20 of 43 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29216 | 5' | -51.5 | NC_006150.1 | + | 101896 | 0.8 | 0.535217 |
Target: 5'- -aGGAGGAAGUGGU--GGCCaACCAGGu -3' miRNA: 3'- gcUCUCCUUUACCGuuUCGG-UGGUCC- -5' |
|||||||
29216 | 5' | -51.5 | NC_006150.1 | + | 138647 | 0.67 | 0.994139 |
Target: 5'- cCGGGAGGAucUGaaGGGGCCGCCu-- -3' miRNA: 3'- -GCUCUCCUuuACcgUUUCGGUGGucc -5' |
|||||||
29216 | 5' | -51.5 | NC_006150.1 | + | 167583 | 0.66 | 0.994934 |
Target: 5'- -uGGAGGGAAUGagccGCAGGGUCACUGcGGu -3' miRNA: 3'- gcUCUCCUUUAC----CGUUUCGGUGGU-CC- -5' |
|||||||
29216 | 5' | -51.5 | NC_006150.1 | + | 207756 | 0.66 | 0.996812 |
Target: 5'- ---uGGGAAaaGUGGCAAAuaccauccGCCaACCAGGu -3' miRNA: 3'- gcucUCCUU--UACCGUUU--------CGG-UGGUCC- -5' |
|||||||
29216 | 5' | -51.5 | NC_006150.1 | + | 20644 | 0.66 | 0.997201 |
Target: 5'- gGAGAcucaucgcgccaaGGAAAcauuguuUGGCAcAGGCCACCAu- -3' miRNA: 3'- gCUCU-------------CCUUU-------ACCGU-UUCGGUGGUcc -5' |
|||||||
29216 | 5' | -51.5 | NC_006150.1 | + | 220250 | 0.66 | 0.997247 |
Target: 5'- uGAGAGGAGGgagGGUuGGGCaugcauaCACgCGGGg -3' miRNA: 3'- gCUCUCCUUUa--CCGuUUCG-------GUG-GUCC- -5' |
|||||||
29216 | 5' | -51.5 | NC_006150.1 | + | 117339 | 0.66 | 0.997292 |
Target: 5'- uGGGAGGAGAggaGGCc--GUCGCCAa- -3' miRNA: 3'- gCUCUCCUUUa--CCGuuuCGGUGGUcc -5' |
|||||||
29216 | 5' | -51.5 | NC_006150.1 | + | 121953 | 0.66 | 0.997591 |
Target: 5'- cCGAcGAGGAAuuacccggaccuggGUGGCGugauGCCGCCcuGa -3' miRNA: 3'- -GCU-CUCCUU--------------UACCGUuu--CGGUGGucC- -5' |
|||||||
29216 | 5' | -51.5 | NC_006150.1 | + | 191453 | 0.66 | 0.99771 |
Target: 5'- gCGcAGAa-AAGUGGCAGGGCgagaACCAGGc -3' miRNA: 3'- -GC-UCUccUUUACCGUUUCGg---UGGUCC- -5' |
|||||||
29216 | 5' | -51.5 | NC_006150.1 | + | 161243 | 0.67 | 0.993882 |
Target: 5'- gGGGcguGGGAAUgGGCAAugGGCCACCccauugacgucaauGGGa -3' miRNA: 3'- gCUCu--CCUUUA-CCGUU--UCGGUGG--------------UCC- -5' |
|||||||
29216 | 5' | -51.5 | NC_006150.1 | + | 215775 | 0.67 | 0.989898 |
Target: 5'- --cGAGGu--UGGCGAGgacGCCACCGuGGa -3' miRNA: 3'- gcuCUCCuuuACCGUUU---CGGUGGU-CC- -5' |
|||||||
29216 | 5' | -51.5 | NC_006150.1 | + | 139411 | 0.77 | 0.708595 |
Target: 5'- aCGGGAGGgcAUcaGGCGAcuuuGGuCCACCAGGg -3' miRNA: 3'- -GCUCUCCuuUA--CCGUU----UC-GGUGGUCC- -5' |
|||||||
29216 | 5' | -51.5 | NC_006150.1 | + | 132676 | 0.75 | 0.804325 |
Target: 5'- aGAGAGGGAGUcGCGAGGCCAgucUCGGa -3' miRNA: 3'- gCUCUCCUUUAcCGUUUCGGU---GGUCc -5' |
|||||||
29216 | 5' | -51.5 | NC_006150.1 | + | 139373 | 0.73 | 0.877375 |
Target: 5'- aCGGGAGGugcgcUGGCGGAcgguccGCCGCCuGGg -3' miRNA: 3'- -GCUCUCCuuu--ACCGUUU------CGGUGGuCC- -5' |
|||||||
29216 | 5' | -51.5 | NC_006150.1 | + | 114836 | 0.71 | 0.927582 |
Target: 5'- gCGAGcGGGGcUGGCAGcAGCCACggaAGGa -3' miRNA: 3'- -GCUCuCCUUuACCGUU-UCGGUGg--UCC- -5' |
|||||||
29216 | 5' | -51.5 | NC_006150.1 | + | 145109 | 0.69 | 0.971896 |
Target: 5'- uGAGGGGAGGUGGC-AGGCUgaguuuuuuGCaAGGu -3' miRNA: 3'- gCUCUCCUUUACCGuUUCGG---------UGgUCC- -5' |
|||||||
29216 | 5' | -51.5 | NC_006150.1 | + | 104541 | 0.69 | 0.979222 |
Target: 5'- gGAGAGGGccGAUgcugagaGGCAAAGUCGgucagaagcaucCCAGGg -3' miRNA: 3'- gCUCUCCU--UUA-------CCGUUUCGGU------------GGUCC- -5' |
|||||||
29216 | 5' | -51.5 | NC_006150.1 | + | 83971 | 0.68 | 0.985374 |
Target: 5'- -uAGAGGAAGUGGUggaaAAAGCC-CCGu- -3' miRNA: 3'- gcUCUCCUUUACCG----UUUCGGuGGUcc -5' |
|||||||
29216 | 5' | -51.5 | NC_006150.1 | + | 182688 | 0.67 | 0.989898 |
Target: 5'- gGGGAGGAAAugugcUGGCGuucuGCCACUu-- -3' miRNA: 3'- gCUCUCCUUU-----ACCGUuu--CGGUGGucc -5' |
|||||||
29216 | 5' | -51.5 | NC_006150.1 | + | 203179 | 0.66 | 0.997292 |
Target: 5'- -cGGAGGAGGUGGCGGcuGCUGCUg-- -3' miRNA: 3'- gcUCUCCUUUACCGUUu-CGGUGGucc -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home