miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29225 3' -59.6 NC_006150.1 + 168927 0.66 0.872174
Target:  5'- aUCUGG-GCCGCUguccUGGCaagucgGUCCGCCGCa -3'
miRNA:   3'- -GGACCgUGGCGGa---GCUG------CAGGUGGUG- -5'
29225 3' -59.6 NC_006150.1 + 92608 0.66 0.872174
Target:  5'- aCUGGCAaCGUggugucugCUCGGgGuuUCCGCCACg -3'
miRNA:   3'- gGACCGUgGCG--------GAGCUgC--AGGUGGUG- -5'
29225 3' -59.6 NC_006150.1 + 140656 0.66 0.86658
Target:  5'- aCC-GGCACgGCCggugccggcaaGACGUCCaguauucaggugcugGCCGCg -3'
miRNA:   3'- -GGaCCGUGgCGGag---------CUGCAGG---------------UGGUG- -5'
29225 3' -59.6 NC_006150.1 + 110773 0.66 0.857966
Target:  5'- gCUGGa--UGCCacaCGGCGUgCACCACa -3'
miRNA:   3'- gGACCgugGCGGa--GCUGCAgGUGGUG- -5'
29225 3' -59.6 NC_006150.1 + 89059 0.66 0.855035
Target:  5'- uCCaGGUcgccuccagGCCGCCggcuaugCGACGgcgacaucggccgCCACCACg -3'
miRNA:   3'- -GGaCCG---------UGGCGGa------GCUGCa------------GGUGGUG- -5'
29225 3' -59.6 NC_006150.1 + 123869 0.66 0.850585
Target:  5'- gUUGGUGCCGCCUaUGAuuuCGUCCAUgaACg -3'
miRNA:   3'- gGACCGUGGCGGA-GCU---GCAGGUGg-UG- -5'
29225 3' -59.6 NC_006150.1 + 164326 0.66 0.850585
Target:  5'- aCCUGaagaCGCCGCUUCuACGUCUgcGCCAg -3'
miRNA:   3'- -GGACc---GUGGCGGAGcUGCAGG--UGGUg -5'
29225 3' -59.6 NC_006150.1 + 58576 0.66 0.843028
Target:  5'- uCCUGcaugACCGCCUCGA-GcCCGCCGg -3'
miRNA:   3'- -GGACcg--UGGCGGAGCUgCaGGUGGUg -5'
29225 3' -59.6 NC_006150.1 + 113608 0.66 0.843028
Target:  5'- gCCcGGCGgagGUCUCGACGUCUGCCu- -3'
miRNA:   3'- -GGaCCGUgg-CGGAGCUGCAGGUGGug -5'
29225 3' -59.6 NC_006150.1 + 49054 0.67 0.819355
Target:  5'- gCUGGUagaaGCCuaGCUUCGAaagcUCCACCACu -3'
miRNA:   3'- gGACCG----UGG--CGGAGCUgc--AGGUGGUG- -5'
29225 3' -59.6 NC_006150.1 + 126458 0.67 0.819355
Target:  5'- aCCUGaGCACCGCUUUGAU-UUCGCgAUa -3'
miRNA:   3'- -GGAC-CGUGGCGGAGCUGcAGGUGgUG- -5'
29225 3' -59.6 NC_006150.1 + 102349 0.67 0.819355
Target:  5'- --aGGCGgCGCUUCGG-GcCCACCGCc -3'
miRNA:   3'- ggaCCGUgGCGGAGCUgCaGGUGGUG- -5'
29225 3' -59.6 NC_006150.1 + 88109 0.67 0.819355
Target:  5'- uCCUGcauGCGCCGCCcccucccccUCGACaaccccaccCCGCCGCg -3'
miRNA:   3'- -GGAC---CGUGGCGG---------AGCUGca-------GGUGGUG- -5'
29225 3' -59.6 NC_006150.1 + 156412 0.67 0.811151
Target:  5'- aCUGGCACaaGCCUCuGCaGUCUugcggACCACu -3'
miRNA:   3'- gGACCGUGg-CGGAGcUG-CAGG-----UGGUG- -5'
29225 3' -59.6 NC_006150.1 + 221111 0.67 0.811151
Target:  5'- aCUGGCGCCcucaucaacCCUCGcCGcuaCACCACa -3'
miRNA:   3'- gGACCGUGGc--------GGAGCuGCag-GUGGUG- -5'
29225 3' -59.6 NC_006150.1 + 68252 0.67 0.811151
Target:  5'- --cGGuUGCCGCCUagGAUGUCUGCUACg -3'
miRNA:   3'- ggaCC-GUGGCGGAg-CUGCAGGUGGUG- -5'
29225 3' -59.6 NC_006150.1 + 766 0.67 0.794314
Target:  5'- gCU-GCGCCGCCUa-GCGUCagGCCACc -3'
miRNA:   3'- gGAcCGUGGCGGAgcUGCAGg-UGGUG- -5'
29225 3' -59.6 NC_006150.1 + 148939 0.67 0.794314
Target:  5'- uCCUcagGGCGCU-CCUCGGCGU-CGCCAa -3'
miRNA:   3'- -GGA---CCGUGGcGGAGCUGCAgGUGGUg -5'
29225 3' -59.6 NC_006150.1 + 220031 0.68 0.776954
Target:  5'- ---cGCGcCCGCCUCgGACGuUCCACCcGCg -3'
miRNA:   3'- ggacCGU-GGCGGAG-CUGC-AGGUGG-UG- -5'
29225 3' -59.6 NC_006150.1 + 136161 0.68 0.770766
Target:  5'- -gUGGCcgccagguuugcauaACCGCCUCGAUGcacgacucgcagaUCCGCUGCc -3'
miRNA:   3'- ggACCG---------------UGGCGGAGCUGC-------------AGGUGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.