Results 1 - 20 of 77 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29231 | 3' | -58.8 | NC_006150.1 | + | 147332 | 1.08 | 0.002951 |
Target: 5'- cCCCCCACCACCACACGACCACCCUAAg -3' miRNA: 3'- -GGGGGUGGUGGUGUGCUGGUGGGAUU- -5' |
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29231 | 3' | -58.8 | NC_006150.1 | + | 88493 | 0.8 | 0.194502 |
Target: 5'- cCCCCCGCCaggGCUGCGCGGCCGcuCCCUGGa -3' miRNA: 3'- -GGGGGUGG---UGGUGUGCUGGU--GGGAUU- -5' |
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29231 | 3' | -58.8 | NC_006150.1 | + | 152262 | 0.79 | 0.246019 |
Target: 5'- aCCCCCACCGCUucCACGAUCACCa--- -3' miRNA: 3'- -GGGGGUGGUGGu-GUGCUGGUGGgauu -5' |
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29231 | 3' | -58.8 | NC_006150.1 | + | 203280 | 0.77 | 0.307671 |
Target: 5'- gCCUCCACCACCACcuccgccGCcACCACCCUc- -3' miRNA: 3'- -GGGGGUGGUGGUG-------UGcUGGUGGGAuu -5' |
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29231 | 3' | -58.8 | NC_006150.1 | + | 12761 | 0.76 | 0.343777 |
Target: 5'- --aCUACUACCACAUGGCCACCCg-- -3' miRNA: 3'- gggGGUGGUGGUGUGCUGGUGGGauu -5' |
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29231 | 3' | -58.8 | NC_006150.1 | + | 150335 | 0.76 | 0.366399 |
Target: 5'- -aCCCGCCGCCcgaGCACGugCACCgCUGGa -3' miRNA: 3'- ggGGGUGGUGG---UGUGCugGUGG-GAUU- -5' |
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29231 | 3' | -58.8 | NC_006150.1 | + | 137629 | 0.75 | 0.414627 |
Target: 5'- aCCUgACCACCAC-CGACCACCa--- -3' miRNA: 3'- gGGGgUGGUGGUGuGCUGGUGGgauu -5' |
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29231 | 3' | -58.8 | NC_006150.1 | + | 220813 | 0.74 | 0.440159 |
Target: 5'- -aCUC-CUACCACugGGCCGCCCUGc -3' miRNA: 3'- ggGGGuGGUGGUGugCUGGUGGGAUu -5' |
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29231 | 3' | -58.8 | NC_006150.1 | + | 120498 | 0.74 | 0.456784 |
Target: 5'- aCCCCCACCACCgucgucuGCcCGACCugUCa-- -3' miRNA: 3'- -GGGGGUGGUGG-------UGuGCUGGugGGauu -5' |
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29231 | 3' | -58.8 | NC_006150.1 | + | 157725 | 0.74 | 0.457668 |
Target: 5'- gCUCCCACCACCACu--GCCAUCCa-- -3' miRNA: 3'- -GGGGGUGGUGGUGugcUGGUGGGauu -5' |
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29231 | 3' | -58.8 | NC_006150.1 | + | 130601 | 0.72 | 0.550153 |
Target: 5'- uCCCCCGCUGCUAUGCuGCCGCCUc-- -3' miRNA: 3'- -GGGGGUGGUGGUGUGcUGGUGGGauu -5' |
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29231 | 3' | -58.8 | NC_006150.1 | + | 88192 | 0.71 | 0.608371 |
Target: 5'- gCCCCCGCC-CUuCugGGCgGCCCUc- -3' miRNA: 3'- -GGGGGUGGuGGuGugCUGgUGGGAuu -5' |
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29231 | 3' | -58.8 | NC_006150.1 | + | 92635 | 0.71 | 0.618167 |
Target: 5'- -aCUCGCCGCCgguGCGCGACuCGCCCg-- -3' miRNA: 3'- ggGGGUGGUGG---UGUGCUG-GUGGGauu -5' |
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29231 | 3' | -58.8 | NC_006150.1 | + | 191740 | 0.71 | 0.625031 |
Target: 5'- gCCUCCACCcgcCCACGCGgacggcuuguuguuGCCugCCUGGu -3' miRNA: 3'- -GGGGGUGGu--GGUGUGC--------------UGGugGGAUU- -5' |
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29231 | 3' | -58.8 | NC_006150.1 | + | 81130 | 0.71 | 0.627973 |
Target: 5'- gCCCCGCCGuuACugGACgUACUCUGGg -3' miRNA: 3'- gGGGGUGGUggUGugCUG-GUGGGAUU- -5' |
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29231 | 3' | -58.8 | NC_006150.1 | + | 183898 | 0.71 | 0.627973 |
Target: 5'- gCCUCCACCugCGC-CGGCCAaCUCUc- -3' miRNA: 3'- -GGGGGUGGugGUGuGCUGGU-GGGAuu -5' |
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29231 | 3' | -58.8 | NC_006150.1 | + | 154902 | 0.71 | 0.627973 |
Target: 5'- aCCCCAUaagUACCAUugGACC-CCCa-- -3' miRNA: 3'- gGGGGUG---GUGGUGugCUGGuGGGauu -5' |
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29231 | 3' | -58.8 | NC_006150.1 | + | 65177 | 0.7 | 0.637782 |
Target: 5'- gCCCCCAgCGCC--ACGGCCGCCg--- -3' miRNA: 3'- -GGGGGUgGUGGugUGCUGGUGGgauu -5' |
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29231 | 3' | -58.8 | NC_006150.1 | + | 183833 | 0.7 | 0.641705 |
Target: 5'- gCCCCCGCCaguccccgcacugacACCACACGucaugcGCC-CCCUu- -3' miRNA: 3'- -GGGGGUGG---------------UGGUGUGC------UGGuGGGAuu -5' |
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29231 | 3' | -58.8 | NC_006150.1 | + | 76023 | 0.7 | 0.647587 |
Target: 5'- uUCUCGCCAaCCGCGCGAUgGCCCc-- -3' miRNA: 3'- gGGGGUGGU-GGUGUGCUGgUGGGauu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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