miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29231 3' -58.8 NC_006150.1 + 247 0.69 0.715484
Target:  5'- aCCCCC-CCGCCACAaa--CACCCc-- -3'
miRNA:   3'- -GGGGGuGGUGGUGUgcugGUGGGauu -5'
29231 3' -58.8 NC_006150.1 + 363 0.68 0.788987
Target:  5'- uCCCCCucCCuCCACGCGAgCCGCgCa-- -3'
miRNA:   3'- -GGGGGu-GGuGGUGUGCU-GGUGgGauu -5'
29231 3' -58.8 NC_006150.1 + 554 0.69 0.724986
Target:  5'- uCCCCCG-CGCCGCGaaaccCGAgCCGCCCg-- -3'
miRNA:   3'- -GGGGGUgGUGGUGU-----GCU-GGUGGGauu -5'
29231 3' -58.8 NC_006150.1 + 701 0.69 0.743761
Target:  5'- cCCCCCGCCGCgACccccgGGCCcCCCUc- -3'
miRNA:   3'- -GGGGGUGGUGgUGug---CUGGuGGGAuu -5'
29231 3' -58.8 NC_006150.1 + 789 0.7 0.676904
Target:  5'- aCCCUCGCCugCcuGCGCG-CCGCCUa-- -3'
miRNA:   3'- -GGGGGUGGugG--UGUGCuGGUGGGauu -5'
29231 3' -58.8 NC_006150.1 + 1501 0.68 0.797674
Target:  5'- cCCUCCGCCGCCAC-CcACuCACCUg-- -3'
miRNA:   3'- -GGGGGUGGUGGUGuGcUG-GUGGGauu -5'
29231 3' -58.8 NC_006150.1 + 1629 0.7 0.671058
Target:  5'- cCCCCCACCcCCagacacacgccaacaACACGAUC-CCCUc- -3'
miRNA:   3'- -GGGGGUGGuGG---------------UGUGCUGGuGGGAuu -5'
29231 3' -58.8 NC_006150.1 + 1994 0.69 0.696292
Target:  5'- gCCUCGCCugcagcugaACCGCGCGugUGCCCg-- -3'
miRNA:   3'- gGGGGUGG---------UGGUGUGCugGUGGGauu -5'
29231 3' -58.8 NC_006150.1 + 4043 0.68 0.797674
Target:  5'- uCCCCCACCACCuggaACACGuggaugguCCACa---- -3'
miRNA:   3'- -GGGGGUGGUGG----UGUGCu-------GGUGggauu -5'
29231 3' -58.8 NC_006150.1 + 12761 0.76 0.343777
Target:  5'- --aCUACUACCACAUGGCCACCCg-- -3'
miRNA:   3'- gggGGUGGUGGUGUGCUGGUGGGauu -5'
29231 3' -58.8 NC_006150.1 + 20070 0.69 0.696292
Target:  5'- aCCCCCACCGUCACAUGAaaaaCCAUCaCUu- -3'
miRNA:   3'- -GGGGGUGGUGGUGUGCU----GGUGG-GAuu -5'
29231 3' -58.8 NC_006150.1 + 24799 0.68 0.797674
Target:  5'- gUCCCGCC-CCA-GC-ACCACCCUAAc -3'
miRNA:   3'- gGGGGUGGuGGUgUGcUGGUGGGAUU- -5'
29231 3' -58.8 NC_006150.1 + 24967 0.66 0.88264
Target:  5'- cCCCCCugC-CUACugGgACCAauUCCUGc -3'
miRNA:   3'- -GGGGGugGuGGUGugC-UGGU--GGGAUu -5'
29231 3' -58.8 NC_006150.1 + 27579 0.66 0.861627
Target:  5'- -aCCCAgCACCuCGgaGACCACCCa-- -3'
miRNA:   3'- ggGGGUgGUGGuGUg-CUGGUGGGauu -5'
29231 3' -58.8 NC_006150.1 + 32429 0.67 0.81463
Target:  5'- gUCCUCGCCACaUACGCucauCCGCCCUc- -3'
miRNA:   3'- -GGGGGUGGUG-GUGUGcu--GGUGGGAuu -5'
29231 3' -58.8 NC_006150.1 + 45054 0.68 0.780169
Target:  5'- aCgCCgGCUgguGCCACACG-CCACUCUGAu -3'
miRNA:   3'- -GgGGgUGG---UGGUGUGCuGGUGGGAUU- -5'
29231 3' -58.8 NC_006150.1 + 46609 0.69 0.705917
Target:  5'- uCCCCCGCCAUaucuaaGCGCuACCGCUgUAGa -3'
miRNA:   3'- -GGGGGUGGUGg-----UGUGcUGGUGGgAUU- -5'
29231 3' -58.8 NC_006150.1 + 58554 0.67 0.812124
Target:  5'- aCCaUCACCACCcucggaucccuccuGCAUGACCGCCUcGAg -3'
miRNA:   3'- gGG-GGUGGUGG--------------UGUGCUGGUGGGaUU- -5'
29231 3' -58.8 NC_006150.1 + 65177 0.7 0.637782
Target:  5'- gCCCCCAgCGCC--ACGGCCGCCg--- -3'
miRNA:   3'- -GGGGGUgGUGGugUGCUGGUGGgauu -5'
29231 3' -58.8 NC_006150.1 + 68810 0.67 0.81463
Target:  5'- cCCCCCAUCACCACACucaCACa---- -3'
miRNA:   3'- -GGGGGUGGUGGUGUGcugGUGggauu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.