miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29231 3' -58.8 NC_006150.1 + 183335 0.69 0.743761
Target:  5'- cCCCCCuCCACCGC-CucCUACCCa-- -3'
miRNA:   3'- -GGGGGuGGUGGUGuGcuGGUGGGauu -5'
29231 3' -58.8 NC_006150.1 + 1994 0.69 0.696292
Target:  5'- gCCUCGCCugcagcugaACCGCGCGugUGCCCg-- -3'
miRNA:   3'- gGGGGUGG---------UGGUGUGCugGUGGGauu -5'
29231 3' -58.8 NC_006150.1 + 20070 0.69 0.696292
Target:  5'- aCCCCCACCGUCACAUGAaaaaCCAUCaCUu- -3'
miRNA:   3'- -GGGGGUGGUGGUGUGCU----GGUGG-GAuu -5'
29231 3' -58.8 NC_006150.1 + 81184 0.69 0.696292
Target:  5'- aCCCCCuCUGCCGC-CG-CCGCCCc-- -3'
miRNA:   3'- -GGGGGuGGUGGUGuGCuGGUGGGauu -5'
29231 3' -58.8 NC_006150.1 + 82732 0.69 0.696292
Target:  5'- aCCCCCGCCACCAgguuccagGCGACUgucuaACaCCUGc -3'
miRNA:   3'- -GGGGGUGGUGGUg-------UGCUGG-----UG-GGAUu -5'
29231 3' -58.8 NC_006150.1 + 46609 0.69 0.705917
Target:  5'- uCCCCCGCCAUaucuaaGCGCuACCGCUgUAGa -3'
miRNA:   3'- -GGGGGUGGUGg-----UGUGcUGGUGGgAUU- -5'
29231 3' -58.8 NC_006150.1 + 70826 0.69 0.724986
Target:  5'- uCCUCCucuugcCCGCUGcCACGGCCGCCaCUAAg -3'
miRNA:   3'- -GGGGGu-----GGUGGU-GUGCUGGUGG-GAUU- -5'
29231 3' -58.8 NC_006150.1 + 554 0.69 0.724986
Target:  5'- uCCCCCG-CGCCGCGaaaccCGAgCCGCCCg-- -3'
miRNA:   3'- -GGGGGUgGUGGUGU-----GCU-GGUGGGauu -5'
29231 3' -58.8 NC_006150.1 + 85615 0.69 0.734414
Target:  5'- -aCCCACCACCACGUGaACUACCaCUu- -3'
miRNA:   3'- ggGGGUGGUGGUGUGC-UGGUGG-GAuu -5'
29231 3' -58.8 NC_006150.1 + 789 0.7 0.676904
Target:  5'- aCCCUCGCCugCcuGCGCG-CCGCCUa-- -3'
miRNA:   3'- -GGGGGUGGugG--UGUGCuGGUGGGauu -5'
29231 3' -58.8 NC_006150.1 + 1629 0.7 0.671058
Target:  5'- cCCCCCACCcCCagacacacgccaacaACACGAUC-CCCUc- -3'
miRNA:   3'- -GGGGGUGGuGG---------------UGUGCUGGuGGGAuu -5'
29231 3' -58.8 NC_006150.1 + 76023 0.7 0.647587
Target:  5'- uUCUCGCCAaCCGCGCGAUgGCCCc-- -3'
miRNA:   3'- gGGGGUGGU-GGUGUGCUGgUGGGauu -5'
29231 3' -58.8 NC_006150.1 + 120498 0.74 0.456784
Target:  5'- aCCCCCACCACCgucgucuGCcCGACCugUCa-- -3'
miRNA:   3'- -GGGGGUGGUGG-------UGuGCUGGugGGauu -5'
29231 3' -58.8 NC_006150.1 + 130601 0.72 0.550153
Target:  5'- uCCCCCGCUGCUAUGCuGCCGCCUc-- -3'
miRNA:   3'- -GGGGGUGGUGGUGUGcUGGUGGGauu -5'
29231 3' -58.8 NC_006150.1 + 88192 0.71 0.608371
Target:  5'- gCCCCCGCC-CUuCugGGCgGCCCUc- -3'
miRNA:   3'- -GGGGGUGGuGGuGugCUGgUGGGAuu -5'
29231 3' -58.8 NC_006150.1 + 183898 0.71 0.627973
Target:  5'- gCCUCCACCugCGC-CGGCCAaCUCUc- -3'
miRNA:   3'- -GGGGGUGGugGUGuGCUGGU-GGGAuu -5'
29231 3' -58.8 NC_006150.1 + 81130 0.71 0.627973
Target:  5'- gCCCCGCCGuuACugGACgUACUCUGGg -3'
miRNA:   3'- gGGGGUGGUggUGugCUG-GUGGGAUU- -5'
29231 3' -58.8 NC_006150.1 + 154902 0.71 0.627973
Target:  5'- aCCCCAUaagUACCAUugGACC-CCCa-- -3'
miRNA:   3'- gGGGGUG---GUGGUGugCUGGuGGGauu -5'
29231 3' -58.8 NC_006150.1 + 65177 0.7 0.637782
Target:  5'- gCCCCCAgCGCC--ACGGCCGCCg--- -3'
miRNA:   3'- -GGGGGUgGUGGugUGCUGGUGGgauu -5'
29231 3' -58.8 NC_006150.1 + 183833 0.7 0.641705
Target:  5'- gCCCCCGCCaguccccgcacugacACCACACGucaugcGCC-CCCUu- -3'
miRNA:   3'- -GGGGGUGG---------------UGGUGUGC------UGGuGGGAuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.