miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29245 5' -59 NC_006150.1 + 172069 1.07 0.002571
Target:  5'- aCACAGCCCGUGAGCGACAGCAGCCAGc -3'
miRNA:   3'- -GUGUCGGGCACUCGCUGUCGUCGGUC- -5'
29245 5' -59 NC_006150.1 + 116463 0.72 0.499045
Target:  5'- cCGCAGCCaguuccaguacuCGUGuGCGaagGCGGUAGCCAGc -3'
miRNA:   3'- -GUGUCGG------------GCACuCGC---UGUCGUCGGUC- -5'
29245 5' -59 NC_006150.1 + 114831 0.72 0.527307
Target:  5'- cCACGGCgaGcgGGGCuGGCAGCAGCCAc -3'
miRNA:   3'- -GUGUCGggCa-CUCG-CUGUCGUCGGUc -5'
29245 5' -59 NC_006150.1 + 99819 0.71 0.546477
Target:  5'- uUACAGUCCaUGuGCuGGCAGCGGCCGc -3'
miRNA:   3'- -GUGUCGGGcACuCG-CUGUCGUCGGUc -5'
29245 5' -59 NC_006150.1 + 90905 0.71 0.556145
Target:  5'- aGCAGCCUG-GGGUG-CGGCAGUCAc -3'
miRNA:   3'- gUGUCGGGCaCUCGCuGUCGUCGGUc -5'
29245 5' -59 NC_006150.1 + 128758 0.71 0.585422
Target:  5'- cCGCGGUCgGUGGGauuGACAacuGCAGCCGGu -3'
miRNA:   3'- -GUGUCGGgCACUCg--CUGU---CGUCGGUC- -5'
29245 5' -59 NC_006150.1 + 181294 0.7 0.614981
Target:  5'- gGCuGCCC-UGGGCGGCGGCGGUa-- -3'
miRNA:   3'- gUGuCGGGcACUCGCUGUCGUCGguc -5'
29245 5' -59 NC_006150.1 + 87931 0.7 0.644648
Target:  5'- uCGCAGCCuCGgugGGGgGGCGG-AGCCGGu -3'
miRNA:   3'- -GUGUCGG-GCa--CUCgCUGUCgUCGGUC- -5'
29245 5' -59 NC_006150.1 + 101527 0.7 0.644648
Target:  5'- gGCAGUCCGU--GCGGCAGCAcGUCAc -3'
miRNA:   3'- gUGUCGGGCAcuCGCUGUCGU-CGGUc -5'
29245 5' -59 NC_006150.1 + 4193 0.69 0.664392
Target:  5'- uGCGGUCUGUGcGUGACAgGCAGCUg- -3'
miRNA:   3'- gUGUCGGGCACuCGCUGU-CGUCGGuc -5'
29245 5' -59 NC_006150.1 + 72388 0.69 0.67423
Target:  5'- aGCAGCaaCGUuAGCGGCAGCAGCa-- -3'
miRNA:   3'- gUGUCGg-GCAcUCGCUGUCGUCGguc -5'
29245 5' -59 NC_006150.1 + 72273 0.69 0.693804
Target:  5'- gGCGGCCU-----CGGCAGCGGCCAGu -3'
miRNA:   3'- gUGUCGGGcacucGCUGUCGUCGGUC- -5'
29245 5' -59 NC_006150.1 + 88689 0.69 0.693804
Target:  5'- gGCGGCCCG-GA-CGACGuGgAGCCGGa -3'
miRNA:   3'- gUGUCGGGCaCUcGCUGU-CgUCGGUC- -5'
29245 5' -59 NC_006150.1 + 131923 0.69 0.703523
Target:  5'- -cCGGCCUGuUGGGCGACGaCGGCCu- -3'
miRNA:   3'- guGUCGGGC-ACUCGCUGUcGUCGGuc -5'
29245 5' -59 NC_006150.1 + 81444 0.69 0.703523
Target:  5'- gGCGuCCCGUGccagauggGGCGGCGGCGGCagaGGg -3'
miRNA:   3'- gUGUcGGGCAC--------UCGCUGUCGUCGg--UC- -5'
29245 5' -59 NC_006150.1 + 186995 0.68 0.713186
Target:  5'- uCGCAcGCCCGauuAGCGACAGgaCAGUCAGc -3'
miRNA:   3'- -GUGU-CGGGCac-UCGCUGUC--GUCGGUC- -5'
29245 5' -59 NC_006150.1 + 132415 0.68 0.722784
Target:  5'- gGCGGCUCGgaccuaUGGGCuGGCGGUGGCCGa -3'
miRNA:   3'- gUGUCGGGC------ACUCG-CUGUCGUCGGUc -5'
29245 5' -59 NC_006150.1 + 131493 0.68 0.732309
Target:  5'- aACAGCCUGUG-GCuGuCAGCAGuCCGu -3'
miRNA:   3'- gUGUCGGGCACuCG-CuGUCGUC-GGUc -5'
29245 5' -59 NC_006150.1 + 152075 0.68 0.750177
Target:  5'- gGC-GCUCGUG-GCGACgaucaacAGCAGCCAc -3'
miRNA:   3'- gUGuCGGGCACuCGCUG-------UCGUCGGUc -5'
29245 5' -59 NC_006150.1 + 52726 0.68 0.751108
Target:  5'- aGCAGCauugCUGUGAGUGAaGGguGCCAa -3'
miRNA:   3'- gUGUCG----GGCACUCGCUgUCguCGGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.