Results 1 - 20 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29245 | 5' | -59 | NC_006150.1 | + | 4193 | 0.69 | 0.664392 |
Target: 5'- uGCGGUCUGUGcGUGACAgGCAGCUg- -3' miRNA: 3'- gUGUCGGGCACuCGCUGU-CGUCGGuc -5' |
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29245 | 5' | -59 | NC_006150.1 | + | 4375 | 0.67 | 0.813394 |
Target: 5'- gCACGGaCCGUaGGC-ACAcGCAGCCGGa -3' miRNA: 3'- -GUGUCgGGCAcUCGcUGU-CGUCGGUC- -5' |
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29245 | 5' | -59 | NC_006150.1 | + | 36200 | 0.66 | 0.821739 |
Target: 5'- aGCAGCUgCGUGugcAGCaGAguGUGGCCAGg -3' miRNA: 3'- gUGUCGG-GCAC---UCG-CUguCGUCGGUC- -5' |
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29245 | 5' | -59 | NC_006150.1 | + | 47672 | 0.66 | 0.821739 |
Target: 5'- --uGGCUCGUcaucaucaucGGCGACGGCGGCCGc -3' miRNA: 3'- gugUCGGGCAc---------UCGCUGUCGUCGGUc -5' |
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29245 | 5' | -59 | NC_006150.1 | + | 52726 | 0.68 | 0.751108 |
Target: 5'- aGCAGCauugCUGUGAGUGAaGGguGCCAa -3' miRNA: 3'- gUGUCG----GGCACUCGCUgUCguCGGUc -5' |
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29245 | 5' | -59 | NC_006150.1 | + | 72273 | 0.69 | 0.693804 |
Target: 5'- gGCGGCCU-----CGGCAGCGGCCAGu -3' miRNA: 3'- gUGUCGGGcacucGCUGUCGUCGGUC- -5' |
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29245 | 5' | -59 | NC_006150.1 | + | 72388 | 0.69 | 0.67423 |
Target: 5'- aGCAGCaaCGUuAGCGGCAGCAGCa-- -3' miRNA: 3'- gUGUCGg-GCAcUCGCUGUCGUCGguc -5' |
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29245 | 5' | -59 | NC_006150.1 | + | 81444 | 0.69 | 0.703523 |
Target: 5'- gGCGuCCCGUGccagauggGGCGGCGGCGGCagaGGg -3' miRNA: 3'- gUGUcGGGCAC--------UCGCUGUCGUCGg--UC- -5' |
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29245 | 5' | -59 | NC_006150.1 | + | 82926 | 0.66 | 0.83794 |
Target: 5'- uUACGGCCCcugcugucgGGGaGGCGGUAGCCAa -3' miRNA: 3'- -GUGUCGGGca-------CUCgCUGUCGUCGGUc -5' |
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29245 | 5' | -59 | NC_006150.1 | + | 87931 | 0.7 | 0.644648 |
Target: 5'- uCGCAGCCuCGgugGGGgGGCGG-AGCCGGu -3' miRNA: 3'- -GUGUCGG-GCa--CUCgCUGUCgUCGGUC- -5' |
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29245 | 5' | -59 | NC_006150.1 | + | 88689 | 0.69 | 0.693804 |
Target: 5'- gGCGGCCCG-GA-CGACGuGgAGCCGGa -3' miRNA: 3'- gUGUCGGGCaCUcGCUGU-CgUCGGUC- -5' |
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29245 | 5' | -59 | NC_006150.1 | + | 90905 | 0.71 | 0.556145 |
Target: 5'- aGCAGCCUG-GGGUG-CGGCAGUCAc -3' miRNA: 3'- gUGUCGGGCaCUCGCuGUCGUCGGUc -5' |
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29245 | 5' | -59 | NC_006150.1 | + | 91661 | 0.66 | 0.829924 |
Target: 5'- cCGCAGCCCG---GCuACGGUGGCCAu -3' miRNA: 3'- -GUGUCGGGCacuCGcUGUCGUCGGUc -5' |
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29245 | 5' | -59 | NC_006150.1 | + | 99819 | 0.71 | 0.546477 |
Target: 5'- uUACAGUCCaUGuGCuGGCAGCGGCCGc -3' miRNA: 3'- -GUGUCGGGcACuCG-CUGUCGUCGGUc -5' |
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29245 | 5' | -59 | NC_006150.1 | + | 101527 | 0.7 | 0.644648 |
Target: 5'- gGCAGUCCGU--GCGGCAGCAcGUCAc -3' miRNA: 3'- gUGUCGGGCAcuCGCUGUCGU-CGGUc -5' |
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29245 | 5' | -59 | NC_006150.1 | + | 113295 | 0.66 | 0.83794 |
Target: 5'- aACGGUCCGUaaaAGCGGCGGUAGaugCGGa -3' miRNA: 3'- gUGUCGGGCAc--UCGCUGUCGUCg--GUC- -5' |
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29245 | 5' | -59 | NC_006150.1 | + | 114831 | 0.72 | 0.527307 |
Target: 5'- cCACGGCgaGcgGGGCuGGCAGCAGCCAc -3' miRNA: 3'- -GUGUCGggCa-CUCG-CUGUCGUCGGUc -5' |
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29245 | 5' | -59 | NC_006150.1 | + | 116463 | 0.72 | 0.499045 |
Target: 5'- cCGCAGCCaguuccaguacuCGUGuGCGaagGCGGUAGCCAGc -3' miRNA: 3'- -GUGUCGG------------GCACuCGC---UGUCGUCGGUC- -5' |
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29245 | 5' | -59 | NC_006150.1 | + | 118779 | 0.66 | 0.829924 |
Target: 5'- uCACGGCCUccGGGCaGCAGCuGCgAGg -3' miRNA: 3'- -GUGUCGGGcaCUCGcUGUCGuCGgUC- -5' |
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29245 | 5' | -59 | NC_006150.1 | + | 127212 | 0.67 | 0.79625 |
Target: 5'- --uGGCUgGUGAGCaAUAGCAGCgGGu -3' miRNA: 3'- gugUCGGgCACUCGcUGUCGUCGgUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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