Results 1 - 20 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29245 | 5' | -59 | NC_006150.1 | + | 219514 | 0.66 | 0.845781 |
Target: 5'- -gUAGCCCGc-AGUGAgAGCAGCUAa -3' miRNA: 3'- guGUCGGGCacUCGCUgUCGUCGGUc -5' |
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29245 | 5' | -59 | NC_006150.1 | + | 191292 | 0.68 | 0.760365 |
Target: 5'- gCGCAGCCCGaauAGCG-UGGCGGUCAa -3' miRNA: 3'- -GUGUCGGGCac-UCGCuGUCGUCGGUc -5' |
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29245 | 5' | -59 | NC_006150.1 | + | 202623 | 0.67 | 0.769516 |
Target: 5'- aGCGGUCCGccUGAGCGGCuugucuuucAGCGuGCCAc -3' miRNA: 3'- gUGUCGGGC--ACUCGCUG---------UCGU-CGGUc -5' |
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29245 | 5' | -59 | NC_006150.1 | + | 127212 | 0.67 | 0.79625 |
Target: 5'- --uGGCUgGUGAGCaAUAGCAGCgGGu -3' miRNA: 3'- gugUCGGgCACUCGcUGUCGUCGgUC- -5' |
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29245 | 5' | -59 | NC_006150.1 | + | 173261 | 0.67 | 0.79625 |
Target: 5'- gGCAGCUCGUGAGCagagcgauguuGGCAcGgAGCCu- -3' miRNA: 3'- gUGUCGGGCACUCG-----------CUGU-CgUCGGuc -5' |
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29245 | 5' | -59 | NC_006150.1 | + | 47672 | 0.66 | 0.821739 |
Target: 5'- --uGGCUCGUcaucaucaucGGCGACGGCGGCCGc -3' miRNA: 3'- gugUCGGGCAc---------UCGCUGUCGUCGGUc -5' |
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29245 | 5' | -59 | NC_006150.1 | + | 91661 | 0.66 | 0.829924 |
Target: 5'- cCGCAGCCCG---GCuACGGUGGCCAu -3' miRNA: 3'- -GUGUCGGGCacuCGcUGUCGUCGGUc -5' |
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29245 | 5' | -59 | NC_006150.1 | + | 113295 | 0.66 | 0.83794 |
Target: 5'- aACGGUCCGUaaaAGCGGCGGUAGaugCGGa -3' miRNA: 3'- gUGUCGGGCAc--UCGCUGUCGUCg--GUC- -5' |
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29245 | 5' | -59 | NC_006150.1 | + | 168695 | 0.66 | 0.83794 |
Target: 5'- aGCGGCCCagaUGAcCGACAGUAGCa-- -3' miRNA: 3'- gUGUCGGGc--ACUcGCUGUCGUCGguc -5' |
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29245 | 5' | -59 | NC_006150.1 | + | 52726 | 0.68 | 0.751108 |
Target: 5'- aGCAGCauugCUGUGAGUGAaGGguGCCAa -3' miRNA: 3'- gUGUCG----GGCACUCGCUgUCguCGGUc -5' |
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29245 | 5' | -59 | NC_006150.1 | + | 152075 | 0.68 | 0.750177 |
Target: 5'- gGC-GCUCGUG-GCGACgaucaacAGCAGCCAc -3' miRNA: 3'- gUGuCGGGCACuCGCUG-------UCGUCGGUc -5' |
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29245 | 5' | -59 | NC_006150.1 | + | 132415 | 0.68 | 0.722784 |
Target: 5'- gGCGGCUCGgaccuaUGGGCuGGCGGUGGCCGa -3' miRNA: 3'- gUGUCGGGC------ACUCG-CUGUCGUCGGUc -5' |
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29245 | 5' | -59 | NC_006150.1 | + | 114831 | 0.72 | 0.527307 |
Target: 5'- cCACGGCgaGcgGGGCuGGCAGCAGCCAc -3' miRNA: 3'- -GUGUCGggCa-CUCG-CUGUCGUCGGUc -5' |
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29245 | 5' | -59 | NC_006150.1 | + | 90905 | 0.71 | 0.556145 |
Target: 5'- aGCAGCCUG-GGGUG-CGGCAGUCAc -3' miRNA: 3'- gUGUCGGGCaCUCGCuGUCGUCGGUc -5' |
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29245 | 5' | -59 | NC_006150.1 | + | 128758 | 0.71 | 0.585422 |
Target: 5'- cCGCGGUCgGUGGGauuGACAacuGCAGCCGGu -3' miRNA: 3'- -GUGUCGGgCACUCg--CUGU---CGUCGGUC- -5' |
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29245 | 5' | -59 | NC_006150.1 | + | 181294 | 0.7 | 0.614981 |
Target: 5'- gGCuGCCC-UGGGCGGCGGCGGUa-- -3' miRNA: 3'- gUGuCGGGcACUCGCUGUCGUCGguc -5' |
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29245 | 5' | -59 | NC_006150.1 | + | 87931 | 0.7 | 0.644648 |
Target: 5'- uCGCAGCCuCGgugGGGgGGCGG-AGCCGGu -3' miRNA: 3'- -GUGUCGG-GCa--CUCgCUGUCgUCGGUC- -5' |
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29245 | 5' | -59 | NC_006150.1 | + | 101527 | 0.7 | 0.644648 |
Target: 5'- gGCAGUCCGU--GCGGCAGCAcGUCAc -3' miRNA: 3'- gUGUCGGGCAcuCGCUGUCGU-CGGUc -5' |
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29245 | 5' | -59 | NC_006150.1 | + | 72273 | 0.69 | 0.693804 |
Target: 5'- gGCGGCCU-----CGGCAGCGGCCAGu -3' miRNA: 3'- gUGUCGGGcacucGCUGUCGUCGGUC- -5' |
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29245 | 5' | -59 | NC_006150.1 | + | 131923 | 0.69 | 0.703523 |
Target: 5'- -cCGGCCUGuUGGGCGACGaCGGCCu- -3' miRNA: 3'- guGUCGGGC-ACUCGCUGUcGUCGGuc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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