miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2925 5' -59.2 NC_001493.1 + 75724 0.66 0.767192
Target:  5'- cGGGUGUgCGCGGCCGuGUCgauauUGUaACAUg -3'
miRNA:   3'- cCCCGCAgGCGCCGGU-UAG-----ACG-UGUG- -5'
2925 5' -59.2 NC_001493.1 + 34393 0.66 0.766259
Target:  5'- cGGGCGUCagaucaaCGCGGCCg----GCAcCGCg -3'
miRNA:   3'- cCCCGCAG-------GCGCCGGuuagaCGU-GUG- -5'
2925 5' -59.2 NC_001493.1 + 47579 0.66 0.757806
Target:  5'- cGGGCGUCacaaaGCcGCUGcUCgUGCGCGCg -3'
miRNA:   3'- cCCCGCAGg----CGcCGGUuAG-ACGUGUG- -5'
2925 5' -59.2 NC_001493.1 + 12842 0.66 0.748311
Target:  5'- cGGGucGCGUCCGgGGUCGGg--GCGCuCg -3'
miRNA:   3'- -CCC--CGCAGGCgCCGGUUagaCGUGuG- -5'
2925 5' -59.2 NC_001493.1 + 113434 0.66 0.748311
Target:  5'- gGGGGUugccggGUCCGUGGCUGggCgacCGCGCg -3'
miRNA:   3'- -CCCCG------CAGGCGCCGGUuaGac-GUGUG- -5'
2925 5' -59.2 NC_001493.1 + 128396 0.66 0.748311
Target:  5'- cGGGucGCGUCCGgGGUCGGg--GCGCuCg -3'
miRNA:   3'- -CCC--CGCAGGCgCCGGUUagaCGUGuG- -5'
2925 5' -59.2 NC_001493.1 + 102450 0.66 0.738717
Target:  5'- cGGGGgGUCgCGaCGGCCGGUCcucuCAUAg -3'
miRNA:   3'- -CCCCgCAG-GC-GCCGGUUAGac--GUGUg -5'
2925 5' -59.2 NC_001493.1 + 69578 0.66 0.728059
Target:  5'- aGGGGgGacucugCCGCGGCCucggcucguucgcGAUCggGgACACg -3'
miRNA:   3'- -CCCCgCa-----GGCGCCGG-------------UUAGa-CgUGUG- -5'
2925 5' -59.2 NC_001493.1 + 94883 0.66 0.719265
Target:  5'- cGGGGCGUCgGacaCGGCCA-UCgcccccgugGCACcCa -3'
miRNA:   3'- -CCCCGCAGgC---GCCGGUuAGa--------CGUGuG- -5'
2925 5' -59.2 NC_001493.1 + 7615 0.67 0.709425
Target:  5'- uGGGGCucgugugcGUCCGCGGCauaCGGUC-GCAUc- -3'
miRNA:   3'- -CCCCG--------CAGGCGCCG---GUUAGaCGUGug -5'
2925 5' -59.2 NC_001493.1 + 123170 0.67 0.709425
Target:  5'- uGGGGCucgugugcGUCCGCGGCauaCGGUC-GCAUc- -3'
miRNA:   3'- -CCCCG--------CAGGCGCCG---GUUAGaCGUGug -5'
2925 5' -59.2 NC_001493.1 + 95737 0.67 0.699522
Target:  5'- -cGGUGUgaugauaucaCCGCGGCUcAUCaUGUACACg -3'
miRNA:   3'- ccCCGCA----------GGCGCCGGuUAG-ACGUGUG- -5'
2925 5' -59.2 NC_001493.1 + 38009 0.67 0.689563
Target:  5'- gGGGGCGaugaUCGgGGCCG---UGUACGCg -3'
miRNA:   3'- -CCCCGCa---GGCgCCGGUuagACGUGUG- -5'
2925 5' -59.2 NC_001493.1 + 65708 0.67 0.679557
Target:  5'- cGGGCGggUGUGGCCAGaagaaGCACGCu -3'
miRNA:   3'- cCCCGCagGCGCCGGUUaga--CGUGUG- -5'
2925 5' -59.2 NC_001493.1 + 92617 0.67 0.679557
Target:  5'- cGGcGGCGagaucaggaucuUCCGCGgcguguaucGCCAAUCcgGUACACu -3'
miRNA:   3'- -CC-CCGC------------AGGCGC---------CGGUUAGa-CGUGUG- -5'
2925 5' -59.2 NC_001493.1 + 90154 0.67 0.669514
Target:  5'- uGGGUGgacaCCGCacaaccGGCCGGUCcGUGCGCg -3'
miRNA:   3'- cCCCGCa---GGCG------CCGGUUAGaCGUGUG- -5'
2925 5' -59.2 NC_001493.1 + 101952 0.67 0.669514
Target:  5'- aGGGGgGUCUggGUGGCCAGUCgagGaguuucaAUACa -3'
miRNA:   3'- -CCCCgCAGG--CGCCGGUUAGa--Cg------UGUG- -5'
2925 5' -59.2 NC_001493.1 + 66139 0.68 0.62609
Target:  5'- cGGGGUGacucgaugggaacaUCCGCGa-CGGUCUGuCGCACg -3'
miRNA:   3'- -CCCCGC--------------AGGCGCcgGUUAGAC-GUGUG- -5'
2925 5' -59.2 NC_001493.1 + 107969 0.68 0.608911
Target:  5'- aGGGGgaccccccgUGUCCGCGGUCAgccucAUCgcgGCgaGCACg -3'
miRNA:   3'- -CCCC---------GCAGGCGCCGGU-----UAGa--CG--UGUG- -5'
2925 5' -59.2 NC_001493.1 + 102228 0.68 0.608911
Target:  5'- aGGcGGCcaggGUCgCGUGGCUGAUgaGCGCGCu -3'
miRNA:   3'- -CC-CCG----CAG-GCGCCGGUUAgaCGUGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.