miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29259 5' -58.3 NC_006150.1 + 217842 1.11 0.002188
Target:  5'- uUCACGCUCAGACUCAGGCGGCACGGGa -3'
miRNA:   3'- -AGUGCGAGUCUGAGUCCGCCGUGCCC- -5'
29259 5' -58.3 NC_006150.1 + 88280 0.77 0.322781
Target:  5'- -uGCGCUCGG-CU-GGGCGGCACGGa -3'
miRNA:   3'- agUGCGAGUCuGAgUCCGCCGUGCCc -5'
29259 5' -58.3 NC_006150.1 + 172616 0.75 0.414996
Target:  5'- aCGCGCg-GGACUCGGuGCGGCGCcGGa -3'
miRNA:   3'- aGUGCGagUCUGAGUC-CGCCGUGcCC- -5'
29259 5' -58.3 NC_006150.1 + 70310 0.73 0.520747
Target:  5'- gUCGCGCUCGGcgcagcuggaagcGCUCGuGGCGGCGCu-- -3'
miRNA:   3'- -AGUGCGAGUC-------------UGAGU-CCGCCGUGccc -5'
29259 5' -58.3 NC_006150.1 + 171662 0.72 0.608089
Target:  5'- aC-CGaUUCAGACgguGGUGGCACGGGa -3'
miRNA:   3'- aGuGC-GAGUCUGaguCCGCCGUGCCC- -5'
29259 5' -58.3 NC_006150.1 + 818 0.72 0.608089
Target:  5'- -aGCGCUgAGucagccgggcgGCUCGGGUuucgcGGCGCGGGg -3'
miRNA:   3'- agUGCGAgUC-----------UGAGUCCG-----CCGUGCCC- -5'
29259 5' -58.3 NC_006150.1 + 72134 0.71 0.627623
Target:  5'- gUCGuuuCGCUCGG-CgCGGGCGGUacACGGGg -3'
miRNA:   3'- -AGU---GCGAGUCuGaGUCCGCCG--UGCCC- -5'
29259 5' -58.3 NC_006150.1 + 165564 0.71 0.656929
Target:  5'- cUCACGCUCGuGAUauUCgAGGUGGCgACGGu -3'
miRNA:   3'- -AGUGCGAGU-CUG--AG-UCCGCCG-UGCCc -5'
29259 5' -58.3 NC_006150.1 + 66393 0.71 0.676387
Target:  5'- cCAagaGCUCGGuua-AGGCGGCcACGGGg -3'
miRNA:   3'- aGUg--CGAGUCugagUCCGCCG-UGCCC- -5'
29259 5' -58.3 NC_006150.1 + 169374 0.71 0.676387
Target:  5'- aUCGgGCUCGGACggagggcaAGGCGGCuuGGu -3'
miRNA:   3'- -AGUgCGAGUCUGag------UCCGCCGugCCc -5'
29259 5' -58.3 NC_006150.1 + 106246 0.71 0.680265
Target:  5'- -aGCGUUgCGGGCUCAGcugacggcaacagccGCGGCcGCGGGg -3'
miRNA:   3'- agUGCGA-GUCUGAGUC---------------CGCCG-UGCCC- -5'
29259 5' -58.3 NC_006150.1 + 204837 0.7 0.686071
Target:  5'- -gGCGCUCAGGCUCGaaacGGCGGUAg--- -3'
miRNA:   3'- agUGCGAGUCUGAGU----CCGCCGUgccc -5'
29259 5' -58.3 NC_006150.1 + 140985 0.7 0.724319
Target:  5'- aUCGCGCUgAGGUUCuGGGCGGCgauuACGGu -3'
miRNA:   3'- -AGUGCGAgUCUGAG-UCCGCCG----UGCCc -5'
29259 5' -58.3 NC_006150.1 + 1851 0.69 0.751354
Target:  5'- gCGCGCUCGcGACggccccaUCAaaagcGGCGGCugGGa -3'
miRNA:   3'- aGUGCGAGU-CUG-------AGU-----CCGCCGugCCc -5'
29259 5' -58.3 NC_006150.1 + 1986 0.69 0.752273
Target:  5'- cCGCGgUCuGGGCUgAGGCGGUcuGCGGu -3'
miRNA:   3'- aGUGCgAG-UCUGAgUCCGCCG--UGCCc -5'
29259 5' -58.3 NC_006150.1 + 183523 0.69 0.77044
Target:  5'- uUUGCGCUgCGGAUUCugcguGGGCuccGGUGCGGGg -3'
miRNA:   3'- -AGUGCGA-GUCUGAG-----UCCG---CCGUGCCC- -5'
29259 5' -58.3 NC_006150.1 + 65445 0.69 0.776695
Target:  5'- -gGCGCUCAGuucgggucgggcuaGCUCGGcggccGUGGCGCuGGGg -3'
miRNA:   3'- agUGCGAGUC--------------UGAGUC-----CGCCGUG-CCC- -5'
29259 5' -58.3 NC_006150.1 + 69608 0.69 0.779358
Target:  5'- cCACGgUUgcugcGGCUCAcGUGGCACGGGc -3'
miRNA:   3'- aGUGCgAGu----CUGAGUcCGCCGUGCCC- -5'
29259 5' -58.3 NC_006150.1 + 202892 0.69 0.779358
Target:  5'- -gGCGcCUCGGGCgguuGUGGCGCGGGc -3'
miRNA:   3'- agUGC-GAGUCUGagucCGCCGUGCCC- -5'
29259 5' -58.3 NC_006150.1 + 219694 0.69 0.779358
Target:  5'- gCACGCucaUCAGACuuucguUCAGcGUGGCAUuuGGGg -3'
miRNA:   3'- aGUGCG---AGUCUG------AGUC-CGCCGUG--CCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.