Results 1 - 20 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29259 | 5' | -58.3 | NC_006150.1 | + | 818 | 0.72 | 0.608089 |
Target: 5'- -aGCGCUgAGucagccgggcgGCUCGGGUuucgcGGCGCGGGg -3' miRNA: 3'- agUGCGAgUC-----------UGAGUCCG-----CCGUGCCC- -5' |
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29259 | 5' | -58.3 | NC_006150.1 | + | 1851 | 0.69 | 0.751354 |
Target: 5'- gCGCGCUCGcGACggccccaUCAaaagcGGCGGCugGGa -3' miRNA: 3'- aGUGCGAGU-CUG-------AGU-----CCGCCGugCCc -5' |
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29259 | 5' | -58.3 | NC_006150.1 | + | 1986 | 0.69 | 0.752273 |
Target: 5'- cCGCGgUCuGGGCUgAGGCGGUcuGCGGu -3' miRNA: 3'- aGUGCgAG-UCUGAgUCCGCCG--UGCCc -5' |
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29259 | 5' | -58.3 | NC_006150.1 | + | 30801 | 0.66 | 0.906904 |
Target: 5'- cCGgGCUCcu-CUCAuuuGGCGGguCGGGa -3' miRNA: 3'- aGUgCGAGucuGAGU---CCGCCguGCCC- -5' |
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29259 | 5' | -58.3 | NC_006150.1 | + | 58827 | 0.67 | 0.837997 |
Target: 5'- -gGCGCcggCGGGCUCgAGGCGGUcauGCaGGa -3' miRNA: 3'- agUGCGa--GUCUGAG-UCCGCCG---UGcCC- -5' |
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29259 | 5' | -58.3 | NC_006150.1 | + | 65445 | 0.69 | 0.776695 |
Target: 5'- -gGCGCUCAGuucgggucgggcuaGCUCGGcggccGUGGCGCuGGGg -3' miRNA: 3'- agUGCGAGUC--------------UGAGUC-----CGCCGUG-CCC- -5' |
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29259 | 5' | -58.3 | NC_006150.1 | + | 66393 | 0.71 | 0.676387 |
Target: 5'- cCAagaGCUCGGuua-AGGCGGCcACGGGg -3' miRNA: 3'- aGUg--CGAGUCugagUCCGCCG-UGCCC- -5' |
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29259 | 5' | -58.3 | NC_006150.1 | + | 69608 | 0.69 | 0.779358 |
Target: 5'- cCACGgUUgcugcGGCUCAcGUGGCACGGGc -3' miRNA: 3'- aGUGCgAGu----CUGAGUcCGCCGUGCCC- -5' |
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29259 | 5' | -58.3 | NC_006150.1 | + | 70310 | 0.73 | 0.520747 |
Target: 5'- gUCGCGCUCGGcgcagcuggaagcGCUCGuGGCGGCGCu-- -3' miRNA: 3'- -AGUGCGAGUC-------------UGAGU-CCGCCGUGccc -5' |
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29259 | 5' | -58.3 | NC_006150.1 | + | 72134 | 0.71 | 0.627623 |
Target: 5'- gUCGuuuCGCUCGG-CgCGGGCGGUacACGGGg -3' miRNA: 3'- -AGU---GCGAGUCuGaGUCCGCCG--UGCCC- -5' |
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29259 | 5' | -58.3 | NC_006150.1 | + | 88280 | 0.77 | 0.322781 |
Target: 5'- -uGCGCUCGG-CU-GGGCGGCACGGa -3' miRNA: 3'- agUGCGAGUCuGAgUCCGCCGUGCCc -5' |
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29259 | 5' | -58.3 | NC_006150.1 | + | 96747 | 0.68 | 0.796827 |
Target: 5'- cCAUGCUgAGAUUCuGGaGGC-CGGGu -3' miRNA: 3'- aGUGCGAgUCUGAGuCCgCCGuGCCC- -5' |
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29259 | 5' | -58.3 | NC_006150.1 | + | 105357 | 0.66 | 0.906904 |
Target: 5'- uUCugGCUCAG-CU-GGGCGGCcuguuccucAUGGa -3' miRNA: 3'- -AGugCGAGUCuGAgUCCGCCG---------UGCCc -5' |
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29259 | 5' | -58.3 | NC_006150.1 | + | 106246 | 0.71 | 0.680265 |
Target: 5'- -aGCGUUgCGGGCUCAGcugacggcaacagccGCGGCcGCGGGg -3' miRNA: 3'- agUGCGA-GUCUGAGUC---------------CGCCG-UGCCC- -5' |
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29259 | 5' | -58.3 | NC_006150.1 | + | 110474 | 0.67 | 0.874915 |
Target: 5'- -gACGUUUAuGCUCcacaGCGGCAUGGGg -3' miRNA: 3'- agUGCGAGUcUGAGuc--CGCCGUGCCC- -5' |
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29259 | 5' | -58.3 | NC_006150.1 | + | 118943 | 0.67 | 0.845746 |
Target: 5'- cCGCGCUCAG-CUCgaagGGGaUGGUgAUGGGg -3' miRNA: 3'- aGUGCGAGUCuGAG----UCC-GCCG-UGCCC- -5' |
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29259 | 5' | -58.3 | NC_006150.1 | + | 130860 | 0.66 | 0.906904 |
Target: 5'- cUCugGaCgacGACUgAGGCGGCagcauagcaGCGGGg -3' miRNA: 3'- -AGugC-GaguCUGAgUCCGCCG---------UGCCC- -5' |
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29259 | 5' | -58.3 | NC_006150.1 | + | 140378 | 0.68 | 0.821994 |
Target: 5'- ---aGCUCAGugUCuGGGCGGU--GGGa -3' miRNA: 3'- agugCGAGUCugAG-UCCGCCGugCCC- -5' |
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29259 | 5' | -58.3 | NC_006150.1 | + | 140985 | 0.7 | 0.724319 |
Target: 5'- aUCGCGCUgAGGUUCuGGGCGGCgauuACGGu -3' miRNA: 3'- -AGUGCGAgUCUGAG-UCCGCCG----UGCCc -5' |
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29259 | 5' | -58.3 | NC_006150.1 | + | 148390 | 0.66 | 0.888331 |
Target: 5'- cCGCGUccgCGGAUggugCuGGCGGUGCGGa -3' miRNA: 3'- aGUGCGa--GUCUGa---GuCCGCCGUGCCc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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