miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29259 5' -58.3 NC_006150.1 + 88280 0.77 0.322781
Target:  5'- -uGCGCUCGG-CU-GGGCGGCACGGa -3'
miRNA:   3'- agUGCGAGUCuGAgUCCGCCGUGCCc -5'
29259 5' -58.3 NC_006150.1 + 217627 0.66 0.912669
Target:  5'- -uGCGUacUCGGACUCAGGauCGGa--GGGa -3'
miRNA:   3'- agUGCG--AGUCUGAGUCC--GCCgugCCC- -5'
29259 5' -58.3 NC_006150.1 + 105357 0.66 0.906904
Target:  5'- uUCugGCUCAG-CU-GGGCGGCcuguuccucAUGGa -3'
miRNA:   3'- -AGugCGAGUCuGAgUCCGCCG---------UGCCc -5'
29259 5' -58.3 NC_006150.1 + 148390 0.66 0.888331
Target:  5'- cCGCGUccgCGGAUggugCuGGCGGUGCGGa -3'
miRNA:   3'- aGUGCGa--GUCUGa---GuCCGCCGUGCCc -5'
29259 5' -58.3 NC_006150.1 + 217999 0.66 0.888331
Target:  5'- gCGgGCUguGACUCAGGagacagcaaCGGC-CGGa -3'
miRNA:   3'- aGUgCGAguCUGAGUCC---------GCCGuGCCc -5'
29259 5' -58.3 NC_006150.1 + 110474 0.67 0.874915
Target:  5'- -gACGUUUAuGCUCcacaGCGGCAUGGGg -3'
miRNA:   3'- agUGCGAGUcUGAGuc--CGCCGUGCCC- -5'
29259 5' -58.3 NC_006150.1 + 173052 0.67 0.845746
Target:  5'- uUCAC-CUCGGAUUCuGGUGGCGagugauCGGa -3'
miRNA:   3'- -AGUGcGAGUCUGAGuCCGCCGU------GCCc -5'
29259 5' -58.3 NC_006150.1 + 118943 0.67 0.845746
Target:  5'- cCGCGCUCAG-CUCgaagGGGaUGGUgAUGGGg -3'
miRNA:   3'- aGUGCGAGUCuGAG----UCC-GCCG-UGCCC- -5'
29259 5' -58.3 NC_006150.1 + 199339 0.68 0.830078
Target:  5'- cCACGCUCAuGAUgUAGGCGGUgACGa- -3'
miRNA:   3'- aGUGCGAGU-CUGaGUCCGCCG-UGCcc -5'
29259 5' -58.3 NC_006150.1 + 140378 0.68 0.821994
Target:  5'- ---aGCUCAGugUCuGGGCGGU--GGGa -3'
miRNA:   3'- agugCGAGUCugAG-UCCGCCGugCCC- -5'
29259 5' -58.3 NC_006150.1 + 96747 0.68 0.796827
Target:  5'- cCAUGCUgAGAUUCuGGaGGC-CGGGu -3'
miRNA:   3'- aGUGCGAgUCUGAGuCCgCCGuGCCC- -5'
29259 5' -58.3 NC_006150.1 + 169374 0.71 0.676387
Target:  5'- aUCGgGCUCGGACggagggcaAGGCGGCuuGGu -3'
miRNA:   3'- -AGUgCGAGUCUGag------UCCGCCGugCCc -5'
29259 5' -58.3 NC_006150.1 + 106246 0.71 0.680265
Target:  5'- -aGCGUUgCGGGCUCAGcugacggcaacagccGCGGCcGCGGGg -3'
miRNA:   3'- agUGCGA-GUCUGAGUC---------------CGCCG-UGCCC- -5'
29259 5' -58.3 NC_006150.1 + 204837 0.7 0.686071
Target:  5'- -gGCGCUCAGGCUCGaaacGGCGGUAg--- -3'
miRNA:   3'- agUGCGAGUCUGAGU----CCGCCGUgccc -5'
29259 5' -58.3 NC_006150.1 + 1851 0.69 0.751354
Target:  5'- gCGCGCUCGcGACggccccaUCAaaagcGGCGGCugGGa -3'
miRNA:   3'- aGUGCGAGU-CUG-------AGU-----CCGCCGugCCc -5'
29259 5' -58.3 NC_006150.1 + 219694 0.69 0.779358
Target:  5'- gCACGCucaUCAGACuuucguUCAGcGUGGCAUuuGGGg -3'
miRNA:   3'- aGUGCG---AGUCUG------AGUC-CGCCGUG--CCC- -5'
29259 5' -58.3 NC_006150.1 + 202892 0.69 0.779358
Target:  5'- -gGCGcCUCGGGCgguuGUGGCGCGGGc -3'
miRNA:   3'- agUGC-GAGUCUGagucCGCCGUGCCC- -5'
29259 5' -58.3 NC_006150.1 + 180865 0.69 0.782892
Target:  5'- gCGuCGCUCGGACagggguucuuagcugUCaaucucugcAGGCGGCGCGGc -3'
miRNA:   3'- aGU-GCGAGUCUG---------------AG---------UCCGCCGUGCCc -5'
29259 5' -58.3 NC_006150.1 + 30801 0.66 0.906904
Target:  5'- cCGgGCUCcu-CUCAuuuGGCGGguCGGGa -3'
miRNA:   3'- aGUgCGAGucuGAGU---CCGCCguGCCC- -5'
29259 5' -58.3 NC_006150.1 + 172616 0.75 0.414996
Target:  5'- aCGCGCg-GGACUCGGuGCGGCGCcGGa -3'
miRNA:   3'- aGUGCGagUCUGAGUC-CGCCGUGcCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.