miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29283 5' -56 NC_006150.1 + 36564 1.09 0.004126
Target:  5'- cUAAGCGGCACGCCGCGUAACAGACCCc -3'
miRNA:   3'- -AUUCGCCGUGCGGCGCAUUGUCUGGG- -5'
29283 5' -56 NC_006150.1 + 116005 0.81 0.270193
Target:  5'- --uGCGGCcuauccACGCCggcuGCGUGGCGGACCCa -3'
miRNA:   3'- auuCGCCG------UGCGG----CGCAUUGUCUGGG- -5'
29283 5' -56 NC_006150.1 + 95972 0.75 0.51003
Target:  5'- -cGGCGGCAgGCCGCGUAuGCGGcugacaacuAUCCg -3'
miRNA:   3'- auUCGCCGUgCGGCGCAU-UGUC---------UGGG- -5'
29283 5' -56 NC_006150.1 + 36801 0.73 0.618173
Target:  5'- --cGCGGCGUGCCGCu---UAGACCCg -3'
miRNA:   3'- auuCGCCGUGCGGCGcauuGUCUGGG- -5'
29283 5' -56 NC_006150.1 + 1035 0.73 0.628195
Target:  5'- gUAGGCGGCGCGCaggcagGCGaGGguGGCCUg -3'
miRNA:   3'- -AUUCGCCGUGCGg-----CGCaUUguCUGGG- -5'
29283 5' -56 NC_006150.1 + 70281 0.73 0.628195
Target:  5'- -uGGCGGCgcuGCGCCGUcacgcCGGACCCg -3'
miRNA:   3'- auUCGCCG---UGCGGCGcauu-GUCUGGG- -5'
29283 5' -56 NC_006150.1 + 86417 0.73 0.648241
Target:  5'- gGGGCGGCGCGCCagGCGc-ACGGugCa -3'
miRNA:   3'- aUUCGCCGUGCGG--CGCauUGUCugGg -5'
29283 5' -56 NC_006150.1 + 69731 0.72 0.678197
Target:  5'- aAGGCGGUguugggccucaACGCCGCGUGuGCGGugUa -3'
miRNA:   3'- aUUCGCCG-----------UGCGGCGCAU-UGUCugGg -5'
29283 5' -56 NC_006150.1 + 88691 0.71 0.734026
Target:  5'- aGGGCGGCccggACGacguggagccggaaCCGCG--GCAGACCCa -3'
miRNA:   3'- aUUCGCCG----UGC--------------GGCGCauUGUCUGGG- -5'
29283 5' -56 NC_006150.1 + 73700 0.71 0.743582
Target:  5'- cAAGCGGCG-GCCGCGacGCGGAagucuucuguccccCCCu -3'
miRNA:   3'- aUUCGCCGUgCGGCGCauUGUCU--------------GGG- -5'
29283 5' -56 NC_006150.1 + 129653 0.71 0.74643
Target:  5'- --cGUGGCcCGCCuCGUcGCGGACCUg -3'
miRNA:   3'- auuCGCCGuGCGGcGCAuUGUCUGGG- -5'
29283 5' -56 NC_006150.1 + 208049 0.7 0.783496
Target:  5'- aAGGCaGaAUGCCGCGUGAguGugCCu -3'
miRNA:   3'- aUUCGcCgUGCGGCGCAUUguCugGG- -5'
29283 5' -56 NC_006150.1 + 143553 0.7 0.792458
Target:  5'- -cGGCGGCGCGCCaGC--AGCGGcGCCUc -3'
miRNA:   3'- auUCGCCGUGCGG-CGcaUUGUC-UGGG- -5'
29283 5' -56 NC_006150.1 + 215419 0.7 0.792458
Target:  5'- gAGGCGGCuGCGaaCCGCacaugGACAGugCCg -3'
miRNA:   3'- aUUCGCCG-UGC--GGCGca---UUGUCugGG- -5'
29283 5' -56 NC_006150.1 + 120574 0.7 0.809957
Target:  5'- --cGCGGCccagcuacaACgGCCgGCGUGAC-GACCCa -3'
miRNA:   3'- auuCGCCG---------UG-CGG-CGCAUUGuCUGGG- -5'
29283 5' -56 NC_006150.1 + 63690 0.7 0.818478
Target:  5'- cAAGCuGCGCGCCGUGUucgcgcaauACAGcUCCa -3'
miRNA:   3'- aUUCGcCGUGCGGCGCAu--------UGUCuGGG- -5'
29283 5' -56 NC_006150.1 + 106062 0.69 0.835025
Target:  5'- -uAGCGGCAgcggGCCGCGUGACucGCgCa -3'
miRNA:   3'- auUCGCCGUg---CGGCGCAUUGucUGgG- -5'
29283 5' -56 NC_006150.1 + 592 0.69 0.835025
Target:  5'- gGAGgGGgaaGgGCCGCGUGuucuugGCAGACCg -3'
miRNA:   3'- aUUCgCCg--UgCGGCGCAU------UGUCUGGg -5'
29283 5' -56 NC_006150.1 + 54876 0.69 0.835025
Target:  5'- gAGGCGGCAUGCguuaUGCuuacgacUGACAGGCUCg -3'
miRNA:   3'- aUUCGCCGUGCG----GCGc------AUUGUCUGGG- -5'
29283 5' -56 NC_006150.1 + 113070 0.69 0.850865
Target:  5'- --uGCGGCGUGCCGUgcaGUGACGacuuGACCUg -3'
miRNA:   3'- auuCGCCGUGCGGCG---CAUUGU----CUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.